RNA id: AMCG00018345


Basic Information

Item Value
RNA id AMCG00018345
length 2517
RNA type mRNA
GC content 0.51
exon number 9
gene id AMCG00018345
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8718740 ~ 8731928 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAGTTTCACACACAGTAACTACAACCTGATAAAGGAGTCTGCTGCaaccttataataataataactattattagcCTATTCATGGCCAATATTAAATGCTCCCAGAATTCCTATTACGATAAGCTTGTGGAATCTTGTCAACCCTGTCATCTGCGTTGCTATAAAAGAGCCCCCTCTGACTGCACGAGCTATTGCAAAACATTGGCGGACAGGTCTGTGTCGGAGAGCCACATTGTGTGGATCATCCTGGGCGTGCTCTTGTTCCTGAGTGCCTTGACTTTCACCCTTACCCTGGCCCTCAGGACGCTGCGGAAAAATAAATCGAAGCATTTGCCCAAGAACACAGATGTTTCCACAGGGCCTGAGCAGGAGAACAAGAGAGATGCTCATTGTAAGGACACCAGGGTCTCAGAGCTCCTGGATGAAGTAATTGTAAACAACTGGGAAGAAGAGCGAAACAATTCTGGCCCCCAGTACACCTCATGTTTCCCTGTCCCAGCTACAGAGGAAGGTGCCACTATTCTGGTAACTGCAAAAACAGCCCAGCTGTGGAACTATGCACTGGACAGCAATGGGGACCCTGTGCTGGGCTTGTGGCAGTCTGTCTTTACAGCCTGAGCAGGGTAGCAAAGTGGATTTGCACTTCTTCTACGGTCAGGATACTGCACCCCCTCTGTTCAAATGTTTGTCATGAGCCatgagttttgtgtttttgtttggcaCCAATCTTGATCTAACCATGTGTATCTTGCAGTTCAGGACAATCTGTGTGATTTGCAATAGGAATCACAAACTGTGCCGCATATTGAACTGTGTAGATTTGCATGAGTCATTactatttgcttgtttgtgtgtgtgtttagttcaGCGTGttatagcaatcaataatttgaAGTAGAAAGAGAAAGTTGTTTGTGAAACACTTAGGGTCCTTGTATATATCAgggctttgttttgatttgtcttACATGTATGATCCCATATGTAGCCTATTTTGCACCATGTTTGCCAACATGAAATAAACTATCAATAATAAGGAACAGGAGGACCACTTGGGTTAGGCAACTTTAATGGTGTAATAAACGTTATAAGACTGATATACATAATGATAatcctcctcctcatcatcatcatcaactgACCGAGGGTACCTGTCCTGGGACAAGCTGACAGTCGCGCTGTCCACCCACACATGACACTGTTGGTCTCCCTCTGCGGGAACACACTCCCCGTCAGGTGACTGAGTTTGGACGGTGTCATGTGATCAGAAGAGGCTGTGTTGCCTTGCCTGGTCGCAATGCCGTAGCAAATCCCATATCCTTACCTTTTGTCCACCTCCCTGGTCCCGGACATTCACCGACCACCGTACCCCCGCCACACCGTGACTATCCGCTCCCCGCCTTTCGGTGTCGACCACGCACCCCGTCCTGCCCGGAGACCCGCAAAGCGCGCAGGCCCTGCCGGGGCCCCGAGCTGGCGTGATCAGTTGCCGGCTGTGGAAGGAGCCCGTCAGAGGATCATGACATTTCAGCTGTTCACTTGTTCGtgtacacaataaaaacaacaacaacaacagagcaATATTTCTTGACAGCGGACCTGTGTTGAAtatctttcaaaatgaaataaacgaAGTCTTTGCGGGCGTCTTGGTGGGGTTAAGATTAACTGGAACCGAAAGCATAAGATTCATGTTGGTTGTAACATtaactgacattttgaaataaactgCACTGGCACGATGAGCGTTGCCAATCAAAATGATACTAAGAGGCAAAACCTGCAGGAGAGGCTGCTGGATGCTGTCAAACAGtgcCAAATCCGTTTCGGGGGAAGAAAAGAGATCGCTTCTGACACAGACAGCAGGGTGATCTGTCTGTGTGCCCAGTTCGAGGCAGTGCTGCAGCACGGGCTAAGGAGGAGCCGGGGCCTGGCACTCACTGCGGCCGCCCTCAAACAAGCAGCCGGCTTCACCAGCAAAGCAGAAGCAGAGCTGTCGTTCTGGTTCTACGTGAAGGAGCACCTGAATAGGCATGAGCTACAGCGCTTTTACTCCCTGCGTCACATCAGCTCGGAGGTGGGCCGCGGGCGGGCCTGGCTGCGATGCGCCCTGAACGAACACTCTCTGGAACGCTACTTCCACACCCTGCTGGCCGAACGGCCGCGCCTCAGTGTCTTCTATGAAGACTGGGCCTTCCTGATGGACGAGGAGCGAGCGAGCATGTTACCGACCATGGCAGCAGGCCTGAACTCCATCCTGTTTGCCATCAACATTGACAACACAGACCTAAACGGGCAGAACCGAGGACCGCCCTCGGTCTCACACTTGCTGCGGGAGTCCACACAGGGCGTGAGCAGCCTGTGGAAGGAGTCGGCCCAGGGGGTCAGCACCCTGCTGCGCGAGATCAGTACCGCCACGGTCGCAGTGCCAGGGTTCAGCTCCCGGCCTGACAGCCACAGCGACCCCCTGCCCGTCTTGCCCCGCAGCACCTCTGCAGGTAAGGAGCATGAGTGA

Function

GO: NA

KEGG:

id description
K17935 SNX29; sorting nexin-29

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145024 lncRNA upstream 13837 8703157 ~ 8704903 (+) True G115796
TU144883 lncRNA upstream 345913 8352077 ~ 8372827 (+) True G115678
TU144888 lncRNA upstream 370904 8294416 ~ 8347836 (+) False G115679
TU144889 lncRNA upstream 370904 8294416 ~ 8347836 (+) False G115679
TU144892 lncRNA upstream 370904 8343130 ~ 8347836 (+) True G115679
TU145109 lncRNA downstream 130153 8862081 ~ 8862511 (+) True G115873
TU145111 lncRNA downstream 136614 8868542 ~ 8870342 (+) True G115875
TU145137 lncRNA downstream 304402 9036330 ~ 9036583 (+) True G115896
TU145180 lncRNA downstream 466949 9198877 ~ 9199440 (+) True G115931
TU145190 lncRNA downstream 496082 9228010 ~ 9230141 (+) True G115939
AMCG00018338 mRNA upstream 52081 8650411 ~ 8666659 (+) True AMCG00018338
AMCG00018337 mRNA upstream 72632 8643855 ~ 8646108 (+) True AMCG00018337
AMCG00018335 mRNA upstream 95086 8604721 ~ 8623654 (+) True AMCG00018335
AMCG00018336 mRNA upstream 126019 8553588 ~ 8592721 (+) True AMCG00018336
AMCG00018333 mRNA upstream 175625 8541991 ~ 8543115 (+) True AMCG00018333
AMCG00018349 mRNA downstream 51701 8783629 ~ 8810474 (+) True AMCG00018349
AMCG00018348 mRNA downstream 81091 8813019 ~ 8847184 (+) True AMCG00018348
AMCG00018350 mRNA downstream 200162 8932090 ~ 8937602 (+) True AMCG00018350
AMCG00018351 mRNA downstream 205687 8937615 ~ 8941636 (+) True AMCG00018351
AMCG00018354 mRNA downstream 288075 9020003 ~ 9021898 (+) True AMCG00018354
TU145016 other upstream 24021 8693364 ~ 8694719 (+) True G115789
TU144853 other upstream 596569 8119778 ~ 8122171 (+) True G115648
TU144781 other upstream 824291 7893627 ~ 7894449 (+) True G115590
TU144414 other upstream 2767723 5949463 ~ 5951017 (+) True G115299
TU144084 other upstream 3954835 4761518 ~ 4763905 (+) True G115049
TU145182 other downstream 467729 9199657 ~ 9201586 (+) False AMCG00018358
TU145192 other downstream 507883 9239811 ~ 9241815 (+) True AMCG00018360
TU145295 other downstream 830233 9562161 ~ 9564404 (+) False AMCG00018372
TU145312 other downstream 877149 9609077 ~ 9612918 (+) False AMCG00018380
TU146017 other downstream 3234319 11966247 ~ 11970778 (+) True G116585

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000063_02041246_02172429.mRNA True 2466 mRNA 0.52 20 CI01000063 2041246 ~ 2172429 (-)