RNA id: AMCG00018354


Basic Information

Item Value
RNA id AMCG00018354
length 489
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00018354
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9020003 ~ 9021898 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTCCTGTCTTAGCACTCATGAAATATTCACCAGCTCTCCACAGCTGTCCCCCGGAGTGGAATTACCCACTTGGCTGTGGCACCCACCCTGCGGAGAAGGCCAACGATGACTTCTACACGAAGAGGCGGCACTTGGCTGAGTTGGCTGCCAAGGGTAGCCTGCCCCTGCACCCCATGCGTGTGGACCATGACCCTGGGGTGCCCTTCAGCCCCGAGATGGCCTGCAACAAGCAGAATGGCCACAAAACTAAAAGCAGCAAAGTGCACACAACACATCCCTTGGCCTACAGCTCCAACACCATCGCCAACCCCGGCGCCATGAAGGGCTGGAATGGCACGGAGACAATGGGCCGCAGGCAGACCTATGGGCCCAAGAAGCATTGCACGGTGGAGCAAGTCAATGAGCTCCACAGTGCCCGCAGCCACCACTACCTGCCCCCCCAACCCTACTTCGTGACCAACAGCAAGACAGAGGTGACTGTGTGA

Function

GO:

id name namespace
GO:0048172 regulation of short-term neuronal synaptic plasticity biological_process
GO:0032591 dendritic spine membrane cellular_component
GO:0045202 synapse cellular_component
GO:0008328 ionotropic glutamate receptor complex cellular_component
GO:0030054 cell junction cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145111 lncRNA upstream 149661 8868542 ~ 8870342 (+) True G115875
TU145109 lncRNA upstream 157492 8862081 ~ 8862511 (+) True G115873
TU145024 lncRNA upstream 315100 8703157 ~ 8704903 (+) True G115796
TU144883 lncRNA upstream 647176 8352077 ~ 8372827 (+) True G115678
TU144892 lncRNA upstream 672167 8343130 ~ 8347836 (+) True G115679
TU145137 lncRNA downstream 14432 9036330 ~ 9036583 (+) True G115896
TU145180 lncRNA downstream 176979 9198877 ~ 9199440 (+) True G115931
TU145190 lncRNA downstream 206112 9228010 ~ 9230141 (+) True G115939
TU145254 lncRNA downstream 415134 9437032 ~ 9437303 (+) True G115990
TU145252 lncRNA downstream 423712 9445610 ~ 9447020 (+) False AMCG00018368
AMCG00018351 mRNA upstream 78367 8937615 ~ 8941636 (+) True AMCG00018351
AMCG00018350 mRNA upstream 82401 8932090 ~ 8937602 (+) True AMCG00018350
AMCG00018348 mRNA upstream 172819 8813019 ~ 8847184 (+) True AMCG00018348
AMCG00018349 mRNA upstream 209529 8783629 ~ 8810474 (+) True AMCG00018349
AMCG00018345 mRNA upstream 288075 8718740 ~ 8731928 (+) True AMCG00018345
AMCG00018356 mRNA downstream 102415 9124313 ~ 9130120 (+) True AMCG00018356
AMCG00018357 mRNA downstream 134283 9156181 ~ 9156453 (+) True AMCG00018357
AMCG00018355 mRNA downstream 140588 9162486 ~ 9187759 (+) True AMCG00018355
AMCG00018358 mRNA downstream 177814 9199712 ~ 9206776 (+) True AMCG00018358
AMCG00018360 mRNA downstream 219464 9241362 ~ 9245234 (+) False AMCG00018360
TU145016 other upstream 325284 8693364 ~ 8694719 (+) True G115789
TU144853 other upstream 897832 8119778 ~ 8122171 (+) True G115648
TU144781 other upstream 1125554 7893627 ~ 7894449 (+) True G115590
TU144414 other upstream 3068986 5949463 ~ 5951017 (+) True G115299
TU144084 other upstream 4256098 4761518 ~ 4763905 (+) True G115049
TU145182 other downstream 177759 9199657 ~ 9201586 (+) False AMCG00018358
TU145192 other downstream 217913 9239811 ~ 9241815 (+) True AMCG00018360
TU145295 other downstream 540263 9562161 ~ 9564404 (+) False AMCG00018372
TU145312 other downstream 587179 9609077 ~ 9612918 (+) False AMCG00018380
TU146017 other downstream 2944349 11966247 ~ 11970778 (+) True G116585

Expression Profile