RNA id: AMCG00018368


Basic Information

Item Value
RNA id AMCG00018368
length 2389
RNA type mRNA
GC content 0.48
exon number 3
gene id AMCG00018368
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9439657 ~ 9447144 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGAGGCGGAAGAGAAAATTGGCACCGGGGTTGGAGATGCCTGTCCTAGAGGTGCCCACTCGGAGCAAAGTGGGTCAAGGCGAGCGGCCTGGGCCTGGACCTGGACCCGGACCCAAGGAGACTGAGCAGAAAGCCTGTCCTGTCACGCTGACCAGTCAGTATTTCACAGTGGACAAGAGTGACTTCAGGTTAGGGGAGGATTTCTTCAATCAGTCCTGCGTTAACCTGGCCAAAGCTTTACTGGGAAAGgTGCTGGTGCGCTGGAGAGCAGATGGGATGGAGCTGAGGGGCCGGGTGGTGGAGACGGAGGCGTACCTGGGGGGGGAGGACCAGGCTTCTCATTCTGCTGGGGGGCGGCGGACTGAGAGGAACACGGCCATGTTCATGAAGCCAGGGACCATCTACGTGTACCAGATATACGGCATCTATCTCTGCATGAACATCTCCAGCCAGGGGGAGGGGGCCGCCGTGCTGCTGCGCTCCCTGGAGCCCGTGCAGGGTCAGGAGGTGATGAGGGAGCTGCGTGGCACCCGGCGCAAGGAGGGGGCACGGACGCTGAAGGACCGGGAGCTCTGCAACGGCCCATCCAAGCTGTGCCAGGCGCTGGACATCAAGAGGGGGTTCGACCGGCGGGACCTGGCCTGTGACAGCGAGGTGTGGCTGGAGTGGGACCCTCAGGCACCACCGGAGCCCCAGAAAGTGGTGAGCGCCCCCCGCGTGGGCATCGACTCTGCTGGGGAATGGGCGGTCAAGCCTTTGCGATTCTACATCCAGGGACACCCCTGTGTGAGCGTGCTGGACCGGGCGGCTGAGAGGAATGGACACTCAAGTCTAGACACCGACCGCTGACCACAATGATTGCACTCAGAGGAGGGGAGCAGGAGAGAGCAGCTGGGTGCTACGGAGGAGATcaaatggaacaaaatacaGTGGAAAATGATTTTCTTATATAGAcgacaaaaaaaaaggatttggtTATTTATTAGTTGCACTACTATAATGGACAAATTCATAATACTCATTTTAATACCATTTCCCCTACTATCGCCATTTATGTTgccatatttatgtttttgtcttttaagaATTGTGTAAGAGCAGGGCATTGTTGAATGATTGTACTTACTCTGTAGTCACACCATGTGTTTATGCAGAAGATATCATCCTGGATTGAATGATGAAGGGACCAGCTGAGGAAAACCACTTAAATACAGATCTGGTATCTTCCAAGTCTTGTAGCCAGGACTGGAGAACTGGGAAACTCGTGATATGTAATGATTTGAAAGGGTTTAACATGGGCTGGCCAGCAATTACGCTCCACCTTCCCAATCTGTCTCCATATAAACTATGAAGCCACTAATCTATTCATTTATTCTTGctctaataatatatatttcccagCTAACAAATTGGCACAAGTGTAGGTCTGCATATTCACCCAGGTTATAAACCACATGTGACTGTAGAACCAGGAAAGTATCTGTGTGGTCTGCCTCCCATGACACGGCATGATTCCAGTTAAACCACTTTCACCTCACTTCTATTCTTATTCAATTCACATCACTTCTCATACGCCTGGAAGAGAAGAGCATGGCGCACCAGCAGTTAACATTGCAAAGATCATACCTTCTCTAGCAGAGGAAACAGCTGTCAACCATTAGGGCTGATAAAACAATCtcattttttgggggttgtttACATTTACTGCACATCTGCCAAGATTTGTATAATCATGCTTGAGTTCCCACATGCATTTTTcaacatatatgttttttttttcttagttttttacattaacaagcaggtttttgtttatatttttaatgtagcctGTGATTGTTATTCCTCCAAATTTCGGTTCGTTCACCGAGACAGTTGTGAACATACAGCGGTAACATCTGTAAAGCTTCTTTCTAttcgtttttttctctctctcccagtgtcATTTTGACCTGTACTGTATCTCCCACCTGTGTAGCTCTACAGAGGTCCTCGGCTAGGAGATTTCTGTTGGCTTTGCTCAGCCTGCAGATGTTCGGTACATTCCCTCTCGTCGGACGGCAGCAGATGTGCATTGCCCTGAAGCTGGCGTCCCTTTTCTGTAGTCTGAAGTGAAGGGGATCATCTGGAATGGCCATTACACTGTTATTCTTTCGGTGTGTTGTTTAATTCTAGCCTTGGTTGTATTTCACATTGGGGAATTTCAGCAGCCGTAATTGGAAGACTCGACATGGGATCGTTTATCATGATCAGGAGACTtgccttttaaattaatatattttttgggggcctccgttttaaattatttgtttcttagagtaaaaataaaattaaataaaatctttccCTGCCAAACATCTCAATATGAGTCAGTGAAAAAGATGAG

Function

GO:

id name namespace
GO:0006284 base-excision repair biological_process
GO:0003905 alkylbase DNA N-glycosylase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03652 MPG; DNA-3-methyladenine glycosylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145254 lncRNA upstream 2354 9437032 ~ 9437303 (+) True G115990
TU145190 lncRNA upstream 209516 9228010 ~ 9230141 (+) True G115939
TU145180 lncRNA upstream 240217 9198877 ~ 9199440 (+) True G115931
TU145137 lncRNA upstream 403074 9036330 ~ 9036583 (+) True G115896
TU145111 lncRNA upstream 569315 8868542 ~ 8870342 (+) True G115875
TU145266 lncRNA downstream 25353 9472497 ~ 9477108 (+) True G116002
TU145267 lncRNA downstream 25353 9472497 ~ 9477108 (+) False G116002
TU145270 lncRNA downstream 36222 9483366 ~ 9486146 (+) False AMCG00018369
TU145282 lncRNA downstream 65170 9512314 ~ 9512754 (+) False AMCG00018374
TU145288 lncRNA downstream 80338 9527482 ~ 9527757 (+) True G116011
AMCG00018365 mRNA upstream 79971 9354703 ~ 9359686 (+) True AMCG00018365
AMCG00018366 mRNA upstream 143752 9291332 ~ 9295905 (+) True AMCG00018366
AMCG00018359 mRNA upstream 154239 9259454 ~ 9285418 (+) True AMCG00018359
AMCG00018360 mRNA upstream 194423 9241362 ~ 9245234 (+) False AMCG00018360
AMCG00018358 mRNA upstream 232881 9199712 ~ 9206776 (+) True AMCG00018358
AMCG00018369 mRNA downstream 33808 9480952 ~ 9484834 (+) True AMCG00018369
AMCG00018374 mRNA downstream 65236 9512380 ~ 9513236 (+) True AMCG00018374
AMCG00018373 mRNA downstream 72523 9519667 ~ 9520987 (+) True AMCG00018373
AMCG00018371 mRNA downstream 98397 9545541 ~ 9561135 (+) True AMCG00018371
AMCG00018372 mRNA downstream 114917 9562061 ~ 9564564 (+) True AMCG00018372
TU145192 other upstream 197842 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 238071 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 744938 8693364 ~ 8694719 (+) True G115789
TU144853 other upstream 1317486 8119778 ~ 8122171 (+) True G115648
TU144781 other upstream 1545208 7893627 ~ 7894449 (+) True G115590
TU145295 other downstream 115017 9562161 ~ 9564404 (+) False AMCG00018372
TU145312 other downstream 161933 9609077 ~ 9612918 (+) False AMCG00018380
TU146017 other downstream 2519103 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 3068659 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 3806199 13253343 ~ 13255794 (+) True G116832

Expression Profile