RNA id: AMCG00018371


Basic Information

Item Value
RNA id AMCG00018371
length 4313
RNA type mRNA
GC content 0.47
exon number 12
gene id AMCG00018371
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9545541 ~ 9561135 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGGACCTGTTGAAATCAGGCTGTGTTGTTGATTCGGCTGAATTTGACTTGGGATATCTGGAGACAGCGACCGGGACAACAGCTCAAAAGCAACAGCTGCTAGGGTCAGTGAGGATGGATAACTCTACGGACCCTGCACCCGAGGCTCAGCCCTTGAAGGGAGGTGAGGGGGAGGCCGAGGTGGAAGCTCCTCCCAAGAAGGGCCAGGGCTGCCTGAGCCGCACAGGATTCTCCAGCCTGTCCCGGTGGCGCACGGCCGCCTTCTTCCTGTCACTCTTCCTCTGCCTCACCATCGTCTTCGCATTCTCCTTCATCATTCCGTGCCCTGTCCGGCCCGTCTCACTTCGCACTTGGGAGAAGACTGTGCCCAGCTTTGcacaatatgACTTTCTGGATATCTTGGACACCAACAAAGACAAAGTCAAGGACATTCTCTTTGCTTTCAAGAACTCCATGGGCAATCTGAACACCACGTGCGCCAACCAAAGCCTGCCCTCGCCCTGCGTGTTCCTGACTGCTGTGACGGGGACGAACGGCGACCCGCTGTGGGAACGCCCACTGGCGGCAGAGCTGGACTGGGCACAGTGCGGCCTCGAGGAGCAGCAAATGCCGGTCTGCCTGGTGTCCCACTCTAACCTGCTGACGGCCCTGTACTTCCAAAACGGAACAGTTCGCTGGCAGGTGCCCCGCTCTCCGGAGCTGTCCTTCAAGCCCCCTGTCCTCAGTGTGCCAGACCTGGATGATGACGGCGTGAGCGACCTGGCGCTAGTCTCACCTGCCCAGGACGAGACGAAGGTGGTTCTTCTGTCTGGTAAGACGGGCAAACAGCTGGGCTCGGAGGCAGTGCTTGACCAGAGCCTGGTACTGGGATACCTCCTCCACAGGACCAAAGCCAGTGCTCACTACCTGCTATTCAGAAAAGAGTCGGGAGTTTATGGGCGTGCTCTGAAGACTATCGCCACTACAGCCAAGACTAAACTGACTGAAGACCCGGAGTGGAAGAAAAAGACCAATGCCAGCACGGGGAATGTGCCAGTCTATATATCCAGCTCAGTGCAGTATCTGGTGAAAGCCACCAAGGGGCGGAGTTTGGAGAACTTGTTGCTGGTGACAACTGAGGGGATGGAGATGATCGACGGACAGAGCCTGGAGACGGTCTGGAAGGTCGATACCAGCACCGTGCTCAGCGAGCCGTCTTTCGGACACTACAACAAAGATGGCGTCTATGATGTGGTGATCGAGCGCGACAGTGGGAACAATACTAAGAAGatCACAATCCTGGACGGCTTGTCGGGTGCAGTGCTGTGGGATGTGAAAATGGCATCCCAGTCCAGGAGTAGCCCCAGGCCCACCTCTGTCAACACTCTGGATCACAGATCAGTGTTCATTTTCTGGGGGAAGTTCCCCTCTGACACCAACAGCACAGATTCGCTGAGCGAGCGATTCTTGTACATGCTACACCCGTCCTACTCCAAGGTGCTCCTGGAGAAGAGCGGCACCGATGACCACATCATAGCTTTCAAAGCGGCGCTGTTCGAGAAAGGCCGTCACGCGTGTTACGTGATGCTGACCGGGCTGGGGCCGGCGGGGGACACCGGGGTGGAGGGGCAGGTGACCCTGAGCAAACACAGGCTGAAGGAGGACATGAAGAACAGCACGGTGCTGCGGCTGCCTGACGACACGGGCTCCGATAGCGATCAGGATATCAAGGAGGGCTTTGACAGGCTGCGTTTCGACAAGGATACTTAAAGGGGCCTGCAGCTACTCTGACCTCTCCACACTACTGTAGAAATGCAATGGCCCCAGCCCTGTCCCTGTCCAACAGGACTGTCCTCAAGAGGTTCTCCACCACTGACACTGACAACTGGCTTTCAGGGACTTTTCTTCTTGCATACGTGTTGGTTGGACTACACTAAACTGCAGAttcgtttttttatttaggcaacggtgtgtgtttttactgtCTGACAGCAAGCCTACCTGATCGGTTACACAGGAGCAGGGGGAAGACACCTTGGGATGCTAGTCAACACTAAGGGAccatgtggagaaaaaaaaaacaattgtccAAGAGAAAActggcaacaacaacaagaatgcCACCAATTTAAAAGCAGGAAACAAAAACCAGGACAAGCTTGCAAGTGTACACGCTGACATTTAAATACCCATTCTGTTCTGTAGAGCAGAGAATAAAAATTAACCGGCAAAAACGAAGTCATACGGTGAATGTTGAGCAGCACAGTGTTTGGAAACAGAGCTTTGAAGAAAAAGTGTGGAGGCACAGACGAGCTCTCTGGCAGCAGGAGCCGCAATCCCCAAGAGAAGCACAAACCCCAGCAGGACTGCAGACGAACAACAAACAGCATCCATTAGCTGCCTGTAAATCTTTTTAACAACACATCTACAAGTCCAAGCAGCTCCCTGAGACAGCAGGACCGCGGCCTCCTTCTGCTGGGCATGAACCTCTGTCTACAAACCAAAgatcagttaaaataaaaaaaataaatcctagaCTTTCTATACGTTTCTTCCAAACAGGAAGCCTTAATTTGGTTGTCTATGCAGTCTGGATGGGAAAGTCATTCTCCAGTATTGTCAgaggagacttttttttttttaaccacctTCTTCCTCAGGGGAATAAAATGACCTTTACCCTTTACGACCGCTCCCAGCTGCCAGGCACTTGTGACACGTCTGGGCCTACTGTATCAGTGTGGGTTTGCTTGGGCCGTAATcccaatgtatattttatttttcttatggtTAATCTCAACTATGTCTGCACACAGATTAACAATCAAACACAAACTAGACCACCCAGAAATCTGTTATGCATTACAGCCCGGTTTGGGAGTCCTGTAAAGGGTCGGGGGCTACTGGGAGACCAGCTCtattctgtccctctctgtctatATGCTTTGTGTCTAGGGAAGTGCAGGGACTGCATAGGACACACACATCGGGCTCTCAAACTGGATTCACCTGAACAGGGGAGAGCCCAGCAGGGCCTGTGGAATATGCACAAGAAAGCCACTAATGCTAAAATGCACACTGCGTTGGGATCGATACGCAGTAGCAAAGACTTACATTATAGCATGGCCGTGTGCTGAGGCAAGATCATCTTTGTGCAATATCAAAACACAGAGGAATCGAGAAAGATGCAGGCGAACATCAAGCCCAAAAGATGCTCATCTGATAATTGGTATCTTGGCAAGGGATGATGTTATATTAGGCTTTCTCAGGTACATTTTGATTTGCTTGGGATGTGTgcatgacatttgttttcaagataAAAATGGGTATATAGTTCTGCTATTAGAAATGTGTTGGCTGAAAGGTTGATTATACAGTTATGATGCAGAAACGGgttgatttattataaatatacagtctGGTATAAATGAATcctcatttcatttatttaaaagaaattggctatatttaaaaccttttagGTCTGTAAAAAGCAAAGCTTCAAATATGCTGCATGAGATGAGCTGTGTTCAGTTGAATATAACTACATGTATATTGCAAATCAACGTTGAAAAGAGGACGGGTTGTTAAATTGTTTGGTTTCCATGTGTCAGACTTCAGTACAGTTATTTTCATTCTGGAAGAATGATTTGTCACTAGTGtttttgaaaagcttttaaatatCTATTATTGTAAGAAGACTAAGACATGAATATTACAAATCATAACTGACCCGCTGTTGAATCGTAAATCATAAACTGGTACCCGGTTGTGTTGTCTTTTACTGTATTGTTAAAAGCCTCGTTCTCCTgcttaaaactgaaaaagcaatagggcacaagtttgtaatttgcaaagcGGGAGTAGGTCAGATTGTGATTCGGTCAAAGTCATATTGTTTAACATTGctaaaacacagcacatttctgGAGGCACTACTGAAATGCAAgagtttgaatacatttcttaaagcaTTAAAACTCTTTATCTGTAGTAAATGTaaactgttacattttaaatataaaatcctTATTCTTGGAACCTTCTGCCTGGGAAGATGGATACAAACACTTGGTTGCTGCTGTAGCTACCAATCTTCCTAGCAACATTGTATTGACCTGCAGCACCTGATCACACGGGCTGCTACACTGATCCTGCTGTGCCTCGTCTGCCTCTGGTATTACTACAGCAATATTCTGAGTTCAATATTGCACATGtaaattattactatttctTCTGGATAACGTAAAATACACCTACTTCAAGGGGAGCATcagagtatttaaaatatattgtcttaattctgaaataaaatgttataattgtaaatata

Function

GO: NA

KEGG:

id description
K17258 ITFG3; integrin alpha FG-GAP repeat containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145288 lncRNA upstream 17784 9527482 ~ 9527757 (+) True G116011
TU145282 lncRNA upstream 32787 9512314 ~ 9512754 (+) False AMCG00018374
TU145270 lncRNA upstream 59395 9483366 ~ 9486146 (+) False AMCG00018369
TU145266 lncRNA upstream 68433 9472497 ~ 9477108 (+) True G116002
TU145267 lncRNA upstream 68433 9472497 ~ 9477108 (+) False G116002
TU145296 lncRNA downstream 3591 9564726 ~ 9566691 (+) True G116019
TU145297 lncRNA downstream 7329 9568464 ~ 9569497 (+) True G116020
TU145298 lncRNA downstream 9092 9570227 ~ 9570461 (+) True G116021
TU145299 lncRNA downstream 10115 9571250 ~ 9571501 (+) True G116022
TU145301 lncRNA downstream 12847 9573982 ~ 9575102 (+) True G116024
AMCG00018373 mRNA upstream 24554 9519667 ~ 9520987 (+) True AMCG00018373
AMCG00018374 mRNA upstream 32305 9512380 ~ 9513236 (+) True AMCG00018374
AMCG00018369 mRNA upstream 60707 9480952 ~ 9484834 (+) True AMCG00018369
AMCG00018368 mRNA upstream 98397 9439657 ~ 9447144 (+) True AMCG00018368
AMCG00018365 mRNA upstream 185855 9354703 ~ 9359686 (+) True AMCG00018365
AMCG00018372 mRNA downstream 926 9562061 ~ 9564564 (+) True AMCG00018372
AMCG00018380 mRNA downstream 45526 9606661 ~ 9612918 (+) True AMCG00018380
AMCG00018383 mRNA downstream 114553 9675688 ~ 9685520 (+) True AMCG00018383
AMCG00018395 mRNA downstream 129691 9690826 ~ 9691578 (+) True AMCG00018395
AMCG00018385 mRNA downstream 147844 9708979 ~ 9711300 (+) True AMCG00018385
TU145192 other upstream 303726 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 343955 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 850822 8693364 ~ 8694719 (+) True G115789
TU144853 other upstream 1423370 8119778 ~ 8122171 (+) True G115648
TU144781 other upstream 1651092 7893627 ~ 7894449 (+) True G115590
TU145295 other downstream 1026 9562161 ~ 9564404 (+) False AMCG00018372
TU145312 other downstream 47942 9609077 ~ 9612918 (+) False AMCG00018380
TU146017 other downstream 2405112 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 2954668 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 3692208 13253343 ~ 13255794 (+) True G116832

Expression Profile