RNA id: AMCG00018374


Basic Information

Item Value
RNA id AMCG00018374
length 216
RNA type mRNA
GC content 0.63
exon number 2
gene id AMCG00018374
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9512314 ~ 9513236 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGCACTGGACAGCAGAAGAGCGCCGGGCCATCGCCTCCACCTGGGACAAGATCGACGTGGAGACAATCGGCCACCAGACCATTcTGCTGGCAGAGACTCTGATCGTGGTCCTGGCCGGACACTTCGGGGCCGAATTCACTGCCGAGATTCAGGCCGCCTGGCAGAAGCTGCTGGCCGTGGCCATCTCAGCCCTCAGCCGCCAGTACTACTGA

Function

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0005833 hemoglobin complex cellular_component
GO:0046872 metal ion binding molecular_function
GO:0005344 oxygen carrier activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145270 lncRNA upstream 26234 9483366 ~ 9486146 (+) False AMCG00018369
TU145266 lncRNA upstream 35272 9472497 ~ 9477108 (+) True G116002
TU145267 lncRNA upstream 35272 9472497 ~ 9477108 (+) False G116002
TU145252 lncRNA upstream 65360 9445610 ~ 9447020 (+) False AMCG00018368
TU145254 lncRNA upstream 75077 9437032 ~ 9437303 (+) True G115990
TU145288 lncRNA downstream 14246 9527482 ~ 9527757 (+) True G116011
TU145296 lncRNA downstream 51490 9564726 ~ 9566691 (+) True G116019
TU145297 lncRNA downstream 55228 9568464 ~ 9569497 (+) True G116020
TU145298 lncRNA downstream 56991 9570227 ~ 9570461 (+) True G116021
TU145299 lncRNA downstream 58014 9571250 ~ 9571501 (+) True G116022
AMCG00018369 mRNA upstream 27546 9480952 ~ 9484834 (+) True AMCG00018369
AMCG00018368 mRNA upstream 65236 9439657 ~ 9447144 (+) True AMCG00018368
AMCG00018365 mRNA upstream 152694 9354703 ~ 9359686 (+) True AMCG00018365
AMCG00018366 mRNA upstream 216475 9291332 ~ 9295905 (+) True AMCG00018366
AMCG00018359 mRNA upstream 226962 9259454 ~ 9285418 (+) True AMCG00018359
AMCG00018373 mRNA downstream 6431 9519667 ~ 9520987 (+) True AMCG00018373
AMCG00018371 mRNA downstream 32305 9545541 ~ 9561135 (+) True AMCG00018371
AMCG00018372 mRNA downstream 48825 9562061 ~ 9564564 (+) True AMCG00018372
AMCG00018380 mRNA downstream 93425 9606661 ~ 9612918 (+) True AMCG00018380
AMCG00018383 mRNA downstream 162452 9675688 ~ 9685520 (+) True AMCG00018383
TU145192 other upstream 270565 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 310794 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 817661 8693364 ~ 8694719 (+) True G115789
TU144853 other upstream 1390209 8119778 ~ 8122171 (+) True G115648
TU144781 other upstream 1617931 7893627 ~ 7894449 (+) True G115590
TU145295 other downstream 48925 9562161 ~ 9564404 (+) False AMCG00018372
TU145312 other downstream 95841 9609077 ~ 9612918 (+) False AMCG00018380
TU146017 other downstream 2453011 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 3002567 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 3740107 13253343 ~ 13255794 (+) True G116832

Expression Profile