RNA id: AMCG00018386


Basic Information

Item Value
RNA id AMCG00018386
length 1938
RNA type mRNA
GC content 0.62
exon number 11
gene id AMCG00018386
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9768768 ~ 9774480 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGGAGGCCGCTACTTTAGATGGGAGTGCTATGGGAAGATGGATGTCATGGCAGCCGCCAACGCCGCCCCTGTGtccatgtctgtgtctgtccccTCCCCCCCCGACGCCCCTCTGACAGTgcccacctccccctcctccgAGGACCCCGGCTTCCCACTAGCGCCCCTGGACAGTGAGGATTACGTGTTCGTGGAGGCCCGGCACTCCAACAAGGTGCTGGAGGGCCTGAACAGCCTGCGACTCAACAACGCCTTCTGTGATGTCATCTTGTGCTGTGGGGGCCAGGAGTTCCCCTGCCACCGCATCGTGCTGGCCTCCTTCAGCTCCTATTTCCAGGCCATGTTCTCCACAGACCTGATGGAGTCCCGGCAGGAGCGGGTGGCCATCAACGGGGTGGAGCCACAGATGATCGGCGTGCTGGTGAACTACGCCTACACGGCCGAGGTGGTCATCACCAAGGCCAACGTGCAGGCCCTTCTGGCCGCTGCCAACCTGCTGGACATCATGGCCGTGCGTGAGGCCTGCTGCAAGTTCATGGAGCGCCAGATGGATGAGATGAACTGCGTGGGCATCCACTGCTTCGCCGAGGCGCACTCGTGCCGCGAACTGGAGTGCCGCAGCATGGACTACATCCTGCAGCACTTCAGCACTGTTTGTCGCCAGGAGGAGTTCCTGTCCCTGTGTGCTGACAAGCTGACGGAGATCATCGCCAGCGACCACCTCAACGTACCCAAGGAAGAGACCGTGTTCGAGGCTGCCATGCTGTGGCTGGAGAAGAGTGCCCCCCGCAAGCAGAGCTTCGAAAAGGTGCTGGAGCACATCCGGCTGCCCCTCATCAGCCCCTACTACATCCACGATGTCATCGAGTCCCTGGAGGTGGTGCGGGAGTCCCTGCAATGCCAGCGGCTCATCTCCGAGGCCAAGGACTACCTGCTGCTGCAGGACCGGCGCGGGGAACTCTTTGGACCGCGCACCCGGCCCCGCCGCTCCACTGGCACAGCGGAGGTGATCGTGACGGTTGGGGGGGAGGATGACAAAGTGGTCCTGCGCAGCGTGGAGAGCTTTGACCCCGTGACCTGCCAGTGGAAGTCACTGGCCTGCCTGCCCTTCGCTGTCAGCAAACACGGCCTGGTGGTGTCAGGCAACACACTGTACTTGGCCGGGGGGGAGTTCCCCGATGGCTCGGCGAGTCGAGAGATGTGGCGCTATGACCCCTGCTTCGACTCCTGGTTGGAGATGGCCCCCATGAATGTTGCACGCTCCGAGCTGGGCCTGGCCATGCTGGACGGCTTCGTGTTTGCAGTGGGTGGCTGGGAGGGCCACTCCCGACTGGACTCGGTGGAATGCTACAACCCTCACACCAACACCTGGCACTTTGTGGAATCTATGAAGATGGCGGTGACCAGCCCTGCGGTGGTGGCTCTGGATGGGCTGCTGTACGTCACGGGGGGAGCTGTTCTGGAGGATGGCGATGGCATGGACCTGGCTCAGGTGTACAACCCCAAAGCCTGCTTGTGGACGGAGGTGGCACCCATGCAGATCGCCCGCTCTGGCTCGGCAGCCTGCATCCTGAGGGGCAAGATCTACGTCATCGGTGGCTGGCATGCCTCCACGGAGAACACGGACAAGGTTGAGTGCTACGAACCCAAGACCAACCAATGGACCATGTGTGCACCAATGAAGGAGCGGCGATACCGGCCTGGTGTGGCCGTGGTGGATGGAAAGATCTATGTgctgggaggagaggagggctgggacagGTACCACGACACCATCGAGCGGTACTGCGAGGAGACGGACAGCTGGGAGATCGTGGGTGAGATGCCAACTAGTCGTAGCTGGCTGAGCTGCGTGTCTCTGCAGGTGAGGAAAGATGCCCGCAGCGCCAGCCGCCCAGAAACCGCCTCCGAAAGGGAGTTTCCCGTGGACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145390 lncRNA upstream 21381 9689765 ~ 9747387 (+) True G116088
TU145317 lncRNA upstream 149863 9618670 ~ 9618905 (+) True G116035
TU145316 lncRNA upstream 154987 9612982 ~ 9613781 (+) True G116034
TU145305 lncRNA upstream 189671 9578837 ~ 9579097 (+) True G116028
TU145304 lncRNA upstream 191168 9577396 ~ 9577600 (+) True G116027
TU145520 lncRNA downstream 229793 10004273 ~ 10012673 (+) False AMCG00018405
TU145529 lncRNA downstream 258073 10032553 ~ 10041833 (+) True G116199
TU145543 lncRNA downstream 269972 10044452 ~ 10046143 (+) False AMCG00018406
TU145548 lncRNA downstream 345697 10120177 ~ 10121558 (+) True G116214
TU145613 lncRNA downstream 440907 10215387 ~ 10216789 (+) True G116264
AMCG00018389 mRNA upstream 8141 9755746 ~ 9760627 (+) True AMCG00018389
AMCG00018387 mRNA upstream 24100 9741599 ~ 9744668 (+) True AMCG00018387
AMCG00018388 mRNA upstream 28270 9734211 ~ 9740498 (+) True AMCG00018388
AMCG00018384 mRNA upstream 39281 9725782 ~ 9729487 (+) True AMCG00018384
AMCG00018385 mRNA upstream 57468 9708979 ~ 9711300 (+) True AMCG00018385
AMCG00018402 mRNA downstream 7120 9781600 ~ 9788774 (+) True AMCG00018402
AMCG00018399 mRNA downstream 51006 9825486 ~ 9833544 (+) True AMCG00018399
AMCG00018398 mRNA downstream 72421 9846901 ~ 9880691 (+) True AMCG00018398
AMCG00018400 mRNA downstream 107878 9882358 ~ 9895427 (+) True AMCG00018400
AMCG00018401 mRNA downstream 125482 9899962 ~ 9925946 (+) True AMCG00018401
TU145312 other upstream 155850 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 204364 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 526953 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 567182 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 1074049 8693364 ~ 8694719 (+) True G115789
TU146017 other downstream 2191767 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 2741323 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 3478863 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 3533418 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 4245448 14019928 ~ 14022806 (+) False AMCG00018537

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050696 False 2715 mRNA 0.55 11 NC_007114.7 58133227 ~ 58154489 (+)
grasscarp (Ctenopharyngodon idella) CI01000112_02213671_02227376.mRNA True 2495 mRNA 0.52 10 CI01000112 2213300 ~ 2227643 (-)