RNA id: AMCG00018398


Basic Information

Item Value
RNA id AMCG00018398
length 4554
RNA type mRNA
GC content 0.55
exon number 34
gene id AMCG00018398
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9846901 ~ 9880691 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCATTACACCTCTgagaaacatacacaaaatactGAAGTGTCGGGGTCTCAAAGACATCGTGGGGGCtttaatgggaaaaaataaacataacggCGGATTGAAAAGAAACGTGGTAAACATTGTGCTGAATTTCACAGCTCGCTCCTCTTGACATGTCAGTACCCTCCTCCACCATGAGCAATGAAGACAGCACTGGCGCGGCTGACAGACTGGACAGTGAGCCCCTTCACATGCCAGGATCATCAGAGTCCGATTGCAGCAGAGCCCTGCTGAGAGGCCGGCCTTCCTGGCAGGAGATCAGTGCCCCTTACACAGAGCTAGACAGTGGGTTGCTCGTCACACACGTCAACCACACCCACGACCTGCTGAGAATCCAAGGGCACCAAACCCCCAGCAGCGACAGGCAGACTTCTGAGGAGTGGCTTAGCAACCACAGTCTGGAGCGCACAGGGCTGACGCTCTCGCACCTCCTCGCTCAGAGCAAGAGCGTTACGGCCTCCAGAGAGGGTGTGAGGAAGCAGATGGAGCTGAGCAGTAGCATCGTCAGTGAGTTCGAGTCCAGGCTGTATGAaATGCTCGAGCTGTACCACCGCAGGATGAGGTGGCTCCAGGAAGGGAGTCGCAAGGTGTTCGGCCTGGTGAGGGGATCCAGAGTGGGGGTGCTTATTGATGCCTCGGATGCCAACTGTGAATCGGGGCGACTGCAAGACCTTCGGAGGAACCTCTTGTGTCTCATAGATGAGCAGCTGTGCCACAAGAAGCAGCTGTACCTGCTCTCCTTCGGCACGGAGACCATGCTGCTGTGGGACAGCCCGAGAGACGTCAACCCCCGCAGGCTGCAGGAGGCACAGCAGTGGGTGCAGCAACTGGGGGGCACTGGGGGCTGTAATCTCCTGAGTGCTCTGAAGAGGGGGCTGCCCTGCAGAGAGATCAACTCGCTGCTCATCATCCTCGGCTCCTGCCCTGACCAGACTGCAGATGTGCTGTCTGCCTACGTGGAGCAGTGCCTGCTGGGAAGGACCTTGCCCCTTCATGCTGTGGCCTACAACAGCAACACTCCCATGACGTGTGCAGCTGTGAAGGCACTGGCCCAGGCCTCCAAGGGACGCTTCCACTGCGGTGCGTCTGACAGACGGGGCGCCGCTCACAGTAGCAGCGACATTGATCTCTTGCGCAGAGAGGCCCAGAGAGCCGGGGATGTGCTGAACCAGATAAAGGAAATGCGTCAGGGCCTGATGGGAGACACGCTTATCTCCGTGACACAAGAGATTTCAACAGAGCTGGACACATTGCCCCCTTCCTGCTTGCTTCCCAAACCACCCAATCACGACGGCCCGCTGAGCATCGAGATGTCAAACCACCTACCCAAAACTTCGGCTGATTGGCTGAAGAGCAACGGGCTGAAAGCCAAGAAGCTCTGCCTGTATCAGGTGCTGGCACCCAATGCTTATGCCCTGCTGGAGGAGTTTGTGCCCATTCTGAGGAAGACTGTGACCTCCACATTACACGAGAAAGCCATGGTGCAGTGTGAATGGCATGATGGAACAGTGAAGAATGTGCACGTGGACCCACCCATATTGTACAACTACCAGAAGCAGCTGGGCCGGGCCGTGCTGGCGCTGGAGCAGCGGGTGGAGTGGCTGACCAGTGGCAGCCGGCAGATCTGGGGCACTGTTTGTGAAAAAAGGCAAGGACCTGCTGCCGACTATTGGGGCACCAGTCCCCCTGAAGTGGTGATTCTGGTGGACGTGTCTCAGATGAACTCGCTGTACCTCATCCACATCCAGCACTCCCTACGGCTGCTGCTAGAGCAACAACTGGCCAGCAAGGACAGCTTCAACATCATAGCGTTTGGGACCGATGTGAAGCCCTGGTGTAAGGACATGGCTGCCGCCACACCAGAGAACCTCCAGGACGCTTGGCAATGGATCCTGGGCTTGAACTGTGGGGGAAGTCGCAATATAATGGGGGCCCTGAAACTGGCTGTGGAATTGGACCTGCAGGCGGCACCGGGACGGTCTCAGGGCGTGTACCTCTTCACCAGCGGGGTGCCCGATCAGGAGTCGGTGCGTTCTAAGAGGCAGGACTGGGATGGAGTGGCGACTGGACAGCGTGGGGCGCAGTGCAGTCTGGGAGTGACCTGTGCTGATGTTGACCTGTGCATCTGCGTGTTGCAGGCGGCGGTGTGTGGGTACGTGTCGGAGAGCTGTGCTGGCGGTGTCCTGCGGCTCCACGTGTGTCTGTTCAGCACCGCCGAGCCACCATTGCAGGACTGCATCCCGCCACGCTTCGCCACCACTGCCGAGACGGCTGCCACGCTGAGGGAGTTGGCTCGACACGGCAATGGGCGCTTCTACTGGCTCAGAGAGATGGGCAATGTCGAGAGCGATGACATCGACGCTTTGCTTGCAGAGATGGAGAAAGCAGTCAACTATTCACAGAAGTGCGCCCTCCTGGTGGACTCCCTGGCTCAGCGGACAGGTAGGAGGCAGCCACAGTGTGACCGGACACTCCAGACACCCCCCAGCAGAGAGAGACTCCGTCCGCCCAAACTGATGGCACCCAGGCCCACCGCACTCATGCTGGCCAGAAAGAACCCCTGTCGTGTCTCGTCCCTGCAGCAAACAAGGGGAGATGGCCTGGATGACAACACTATGTCTCAGAAGGCTCTTACTTGGCGCCCAGCCAGTGCCAAGCCAAATATCCCCCCCGCACAGCCAATGAGGAGCTGGGGGTCAGTGGACACCGATGCCAAGCAGAAGAACAAACCTGAAGCATCTCAGGCTGTTTTTTACACCGAAGACGGCAATAGTGTGGGCACAGTGTTCAAGACATACCCCAAGGTGAAGAGTGTGAGGAAGTCCATTCCCTCTGCTGCCCTGCCGAAGGAAGAAGAGTTCTGCTCCACGAAGCAGTGGCTGAAGAAATTTAGTATCCAGAAACTGAAGCTGGATCTTCACAAACTGGTGTCTGGGCCTGACTGCACTCACCAGAAGAAACTGGTGCCCACTGTTCATAAGAAGGTCTCAGCCAAGTACTGCACCATCTTCCCCAGCGTCCAAATCAATggtGTTGTGAAGCACCTGCAGCTTACGGTTCGAGAGCTGGAGCAATACGTGACACAGACCGAGAGGGTTATCTGCCGGTATGTCCAGAGGATGCAGTGGCTGCTCTCAGGCAGCAGGCGTCTGTTTGGGACGATCCTGGAGAAGAAGGTGTGCATCCTGTTGGACACGTCGGGCTCCATGGACCCCTACCTGCCCGAGGTCAAGAAAGAGCTCACCTCTCTGATATGGGAGCAGCTGCACAGGAATGGGGTGAGCTTCGGCCTGCTGAGTTTCTCGGACACCGTATTGGCGTGGCGGGGGGCGCTGGCCGAGCCCACGGAGGAGGCGTGTCACGACGCGGTGCAGTGGGCCGCCCAGCTCAGAGCACACGGGAGCACCTGCACTCTGGAAGCCCTGCAGGCGGCCTGTGGCGCAGCCAATGAGTTTCTGAGGAGGCTGGCCCAGCAGAGGGGTGGACGGTTCCACCGATGCCATGCGGACCTGGACGCACATCTGGTGGCTCACAGGATGCTGACAGACGGATTCTCTGATGAGGACGACCCGGTTCTCCCAGTGTTTGAAGGCGATGATCTGAGGAAGCTCGTACAGGAGATTGGAAAAGCGAGGCGCTTCCTGACCCAGGCCCGCGCTTTTCGAGCCCTGCTTCTGGATAAGCAGAAGACCGCAGACCCAGATGACTTCTCTATGAGCAGAGCATATGCAGgAAAACCCAATGCGTTTGTATCCAGTAGTACACGAAGCTGAGAAGTGCCATTTACTGTCCCCATCAAACATCTTCAACTGGGCTTGCAAATTGCTATATAATTTGATTTCAATCATTCTGAAATGTCTCATAGTCTTGGCcttttctgttaatttaaatttgccatatccttttttttttttttttttttttaaggatattGTGTAATCTTAAACAAGATCACTTTATTGTAGGGGCAGATTAATGTTCTCTGCAGAGTCAGGTTTGGCCACAGATGGCCCCGTGTGCGATTGTGCAGTTCACCTTCACAGATCTAACCCCTAGAGAGCGTCTGCAGCTTCTTTACAATACTCTATATTGACCACCAGGTGTCTTCTGTGTCTCTCCTGTGACGAGATCTGCGCTCTTTAGTCACACTGGATTCTGGGGGCACAGGATGGAACCCCTACAGGGAATGTATAAGACCTGTGGCGACTGAGTTAAAACTCAGGGGGGAATAGCCTGTATTCCCAGACATTGAGAGTAGTGTTGATGATGATGGAAGATCTTGTGTTTTCTTCAGATTGCTTTTGAATGTCTTGATTTACTTGATACTGACATCCGtatgtatattgtttgtgtgtaaatgagACAATAACCACAGgccaaaaatacatgtataaaatcgTACTGTTATTATCGAGCATAAACACTGACTACAATACCACCATGAAGGCCTATTAAGGACTGTTAGAGGTCATTATAACATGACAGTGTATGTTGAGATGATGGCAAGTTTgggc

Function

GO: NA

KEGG:

id description
K24509 VWA3; von Willebrand factor A domain-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145390 lncRNA upstream 99514 9689765 ~ 9747387 (+) True G116088
TU145317 lncRNA upstream 227996 9618670 ~ 9618905 (+) True G116035
TU145316 lncRNA upstream 233120 9612982 ~ 9613781 (+) True G116034
TU145305 lncRNA upstream 267804 9578837 ~ 9579097 (+) True G116028
TU145304 lncRNA upstream 269301 9577396 ~ 9577600 (+) True G116027
TU145520 lncRNA downstream 123582 10004273 ~ 10012673 (+) False AMCG00018405
TU145529 lncRNA downstream 151862 10032553 ~ 10041833 (+) True G116199
TU145543 lncRNA downstream 163761 10044452 ~ 10046143 (+) False AMCG00018406
TU145548 lncRNA downstream 239486 10120177 ~ 10121558 (+) True G116214
TU145613 lncRNA downstream 334696 10215387 ~ 10216789 (+) True G116264
AMCG00018399 mRNA upstream 13357 9825486 ~ 9833544 (+) True AMCG00018399
AMCG00018402 mRNA upstream 58127 9781600 ~ 9788774 (+) True AMCG00018402
AMCG00018386 mRNA upstream 72421 9768768 ~ 9774480 (+) True AMCG00018386
AMCG00018389 mRNA upstream 86274 9755746 ~ 9760627 (+) True AMCG00018389
AMCG00018387 mRNA upstream 102233 9741599 ~ 9744668 (+) True AMCG00018387
AMCG00018400 mRNA downstream 1667 9882358 ~ 9895427 (+) True AMCG00018400
AMCG00018401 mRNA downstream 19271 9899962 ~ 9925946 (+) True AMCG00018401
AMCG00018397 mRNA downstream 46265 9926956 ~ 9943301 (+) True AMCG00018397
AMCG00018396 mRNA downstream 79530 9960221 ~ 9968405 (+) True AMCG00018396
AMCG00018405 mRNA downstream 125408 10006099 ~ 10012595 (+) True AMCG00018405
TU145312 other upstream 233983 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 282497 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 605086 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 645315 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 1152182 8693364 ~ 8694719 (+) True G115789
TU146017 other downstream 2085556 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 2635112 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 3372652 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 3427207 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 4139237 14019928 ~ 14022806 (+) False AMCG00018537

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000112_02143799_02166631.mRNA True 2088 mRNA 0.52 18 CI01000112 2143745 ~ 2166631 (-)