RNA id: AMCG00018400


Basic Information

Item Value
RNA id AMCG00018400
length 1398
RNA type mRNA
GC content 0.59
exon number 11
gene id AMCG00018400
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9882358 ~ 9895427 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGTTAATGGTGCACCCTGCCAGGTAGACTCGCTCACAAGCCCATACAAGGCACAGCAGAAGGTGGGCTTCTGCAGGATACAGGCTAATGGGCATGCCTGTAGGAATGGCACCGGCTCTGCCCCCAGCAGCGCCAAGCGCAGGTCTAATGGAGTTGTGCCGCACACGAGCAAGAGCTCCGACTGCGGCACGGGCTGGCACGTGGGGCCGGCCAACCAGAGGGGGGCAGGGAAAGTGCTGGTGACGGGGGGTGCTGGATACGTCGGACACAGTCTGGGCCGAGCCCTGGCCGTCAGTGGCGTGTCGGTCATCCTCTTGGACCTGCTGAAGCCCAGATGGGAAATCCCACAAGGAGCTGTCTTTCATCAGAGCGACATTAGAGACTACGATGCTCTCTTTACAGCCTGCGAGGGGGTGGACTGTATATTTCACACAGCCTCCTACGGGATGTCCGGCCCAGAGCAGCTGAAGAAAGAGCAGATTGAATCGGTCAACGTTTGGGGGACAAGCAATGTCATTAATGTGTGCACCCAGAGGAGCATCCCCAGGCTCGTGTACACCAGCACGGTGAATGTGGTGTTCGCCGGCAGTCCCATCGAGCAGGGCGATGAAGAGACAGTCCCATGTGTTCCTCTGGACAAGTTGGTGGATCATTACTCCAAGTCCAAAGCCGTAGCAGATCAGATGATACTGTCTGCAAACGGGAGGACACTGAAGGATGGAGGTTTCCTCCGAACCTGTGTCCTGCGCCCCCCCGGCATCTACGGGCCTGGAGAGCGACGGCACTTACAGAGAGTAGCAGTCAACATTGAGAGACGGCTGTTCAGCTTCAGCTTTGGGAACCGCAATGCCAAGATTAACTGGGTGCACGTGGATAACCTGGTGATGGCGCATGTGCTGGCCGCAGAGGCGCTGACAGCAGGGAAGCACTTCGTCGCCAGCGGACAGGCCTACTACATCAATGACGGAGAGGCGGTCAACCTGTTTGAGTGGTTAATGCCTCTGtttgaGAAGCTGGGCCACAGTCGGCCTGTGATACACCTGCCAGTCTCCTTGGTTTACACTGCAGCTGTCCTGATGGAGTGTGTGCACGTGGCCCTGAGGCCGGTCGTCCAGGTGCCACTGCTCTTCACCAGGAACGAGGTGAGAAACATCGCCGTCACCCACACCTTCAAGATCGACAAGGCCTGCAGGCAGCTGGGCTTCTGTCCCAAGAGGTATGACCTGGCCGACTCGGTGCACCACTACCTGAAGACACGGCAGCCGCGGCCCGGCCTCCTCCTGCTCTGTTTCAGGGCCGGCCTGCTCTTCCTCAGCCTGGTGGCTCTGCTGTTCTTCTCCTGCTTCTGGCAGGACCGGTCTGGGCAGGAGAGCTCCAACACCACGCTGTCCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145390 lncRNA upstream 134971 9689765 ~ 9747387 (+) True G116088
TU145317 lncRNA upstream 263453 9618670 ~ 9618905 (+) True G116035
TU145316 lncRNA upstream 268577 9612982 ~ 9613781 (+) True G116034
TU145305 lncRNA upstream 303261 9578837 ~ 9579097 (+) True G116028
TU145304 lncRNA upstream 304758 9577396 ~ 9577600 (+) True G116027
TU145520 lncRNA downstream 108846 10004273 ~ 10012673 (+) False AMCG00018405
TU145529 lncRNA downstream 137126 10032553 ~ 10041833 (+) True G116199
TU145543 lncRNA downstream 149025 10044452 ~ 10046143 (+) False AMCG00018406
TU145548 lncRNA downstream 224750 10120177 ~ 10121558 (+) True G116214
TU145613 lncRNA downstream 319960 10215387 ~ 10216789 (+) True G116264
AMCG00018398 mRNA upstream 1667 9846901 ~ 9880691 (+) True AMCG00018398
AMCG00018399 mRNA upstream 48814 9825486 ~ 9833544 (+) True AMCG00018399
AMCG00018402 mRNA upstream 93584 9781600 ~ 9788774 (+) True AMCG00018402
AMCG00018386 mRNA upstream 107878 9768768 ~ 9774480 (+) True AMCG00018386
AMCG00018389 mRNA upstream 121731 9755746 ~ 9760627 (+) True AMCG00018389
AMCG00018401 mRNA downstream 4535 9899962 ~ 9925946 (+) True AMCG00018401
AMCG00018397 mRNA downstream 31529 9926956 ~ 9943301 (+) True AMCG00018397
AMCG00018396 mRNA downstream 64794 9960221 ~ 9968405 (+) True AMCG00018396
AMCG00018405 mRNA downstream 110672 10006099 ~ 10012595 (+) True AMCG00018405
AMCG00018407 mRNA downstream 120519 10015946 ~ 10025490 (+) True AMCG00018407
TU145312 other upstream 269440 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 317954 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 640543 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 680772 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 1187639 8693364 ~ 8694719 (+) True G115789
TU146017 other downstream 2070820 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 2620376 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 3357916 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 3412471 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 4124501 14019928 ~ 14022806 (+) False AMCG00018537

Expression Profile