RNA id: AMCG00018413


Basic Information

Item Value
RNA id AMCG00018413
length 3910
RNA type mRNA
GC content 0.51
exon number 17
gene id AMCG00018413
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10137980 ~ 10150773 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTACTCATATAACTTCCGTTGTCGAGGAATTTATGGCTGTTTTCTGAGACAAACACTTCGGTTTTTACAAAACACGGACATATGAATGGCTTAGAAGATGGCAAGACCTAAGCAGGACGCTTGGGTTGTTCGTGAATGTAACGTGACAATATTGACTGTAATATTAGTAAACTTATTTTGCAGACGGGGGGACTAGTGGATATATTTATCTCGGAGAGGCATGCTTCCGCGCAGGAGGCGCCCCTTGCTGGGGGAAAGTTCTGGTAACCTGTCTTTATTGGTAAGGGCACACTTGGCGAATAGACATAGCGAAAATGTGATTTTACAGTATCCCGAAGAGGACGACGATGATGTCCAGTTTGACACCTCAGACTCTCCTGATCAATATGAGGCACAACTGGGTGACAAGAAATATTTGCCTATCCAGGAGTTTGCCTCGGCCATCCCCAACCAGCTGCTCCTGGGGTCTCTGCTGGAACACCTGTGCTGCGTGTATGAGAAGGACCCCCATCGCTCCCGCCTGCTCTTTAAAGTGATTGGTCAGCATCTGTCAGCAATGAACCTGTTGTCCCCCCTGGCCTTCAGCGATGAGTTCAGCACTGTGAGACTGCAGCACAACCGTGCCTTCACTGAGCTATTGCACGCGGCCAACAACATAGTCTGCCCCCAGgagCTTAGATTTCTGGATTCTGGTGGCGAAAGTAATGCTTTGAGATCCAAAGATGGGCTTTTCCAAGCACAGACATCTCGATACCTCAGTGAGTTTGAAGAAATATCCAGGCTCGGAAAAGGCAGCTATGGCAAAGTTTTTAAGGTGAAAAACAAGTTGGATGGTCAGCAGTATGCAGTGAAAAAGATTCTCATCAAAAATGTTTCGAGGGATGACTGTATGAAGGTTCTCAGGGAAGTGAAAGTACTGGCTGGGCTTCAGCACTCCAACATTGTGGGCTATCACACTGCCTGGATGGAGCATGTGCAGCCCCCTGAGAAAAGTATGAAATCCGTTCTCTCTGATTTGCCTGCTCTGGAGAGGCCATCACAGAGGGAAGATCCTGAGGAATCCAGTAGCAGTAGCAACAGCTCCTCTATCGTGTTTGAGAACTCGGGGACTTCGAGGGATGAGAAAGGGGATTGTCTCGCCAAGAGTAACATCTCTAGGGAAGACTCGTGGAGTGTTTCTGTGCCCAGGGAGGACCAGAGTTCTGCTGTTGGGCCTGCAGGCTGTCCCAAGGGGAAGCACAACTTGGAAGGCCTGATTCCTTGTGTGTATTTAGGACCCACTCGCTCGACAATCAGCGGCTGTCCTGCCGTCAGCTGGGACAGGATGGCACTGACTGAAGAGAGACGTAACAGCTCCAAGCTGgaagtaaacaacaacaactcctATCTGGAGAGGGACAGCCAGCAGTGGAGTGAGCAGTGCCCCCAGAGGGAAGCCTGCGTGCACAGATACACTGAGATACAGTTCCATCTCATGCTCTACATCCAAATGCAGCTGTGTGAAATCTCCCTCAGGGACTGGATACTGGGCAGGAACATGGCACCCAGAAAGGAGCTGCCTAGAAATATTTTCCTTCACGATGAGGATTTCCACGTGCGGATCGGAGATTTCGGACTTGCTTGCAAGGATATGATTGTGGATGAGAGCGAGCAGTTGTCACCCGTCACACAGGCCAGTGACTCTGCACACACGTCTGGAGTAGGAACCTATGTTTATGCAGCTCCAGAACAACTGGAAGGCTCCAATTATGATTCCAAGTCAGACATGTACAGTGTGGGGGTCATTGTTCTGGAGCTGTTCCAGCCATTTGGGACGGAGATGGAGAGGGTGCGGACGCTGGGGGAGCTGCGCAAGGGGACGATCCCAGAGGCCTTTACCCAGCACTGGCCCCTTCTCGCCAAGTTAGTCTGCCAGCTCACCAGCCCAGACCCTGCCCTGCGGCCCAGCGCTGCGCAGCTGCTGCACGGCGAGCTCTTCCACAGCTCTGAGCGGGTTATTCACACCTTGCAGAGGAAAGTGGAGGAGCAGGAATGTGAAATTGTGCAGCTGAAAAGGCAGATCCATGAGCTCCTCACCATGGGGCAGAAAGAGGACAAGACCCCAGTGCTGCTGACACCAGACAAACTGACCCTCACAGGGAGGCAGCTGCTGtgattgtgtaaaaaaaaaagaaaaaagaaaaattcgCTGCAAatggtgtatttgtatttaataattgtacTAATTTATGCAAGATTTAATGGTTTTAAGCTGTGTGAAGAATATTTTGTACATAgttgctgtgtttctctcaAAAGGCCtgagaaataaatctgtaaCTGATCAAGTTAACTCTCAGGTCCCTAAGtaataaaaaactaaaggaaactgtttaaatgtaatttctttagTTCTGGAATTATATAGAAATGCACTCAAACAGAAGTCAAGAAGAGCCAAAGTGGACCAAaagtttaatgttatttttagaagaaaaactGCTACAAAGGGTgttaaaagtagttttttttgttttttttatattacagtactTAACATTTCACCCACTGAGTTGTAAcccaaataatatttataaatgggCATTGAAACAGCACACATCTACATGTAGGCACAAGGTGGGAAGGAGATTCTGTAATCCAACTATCTGACATCTTCACTTTAGATTTGGgcaacaatacagtacagactaTTTCACTTTGACTGTAGAACCTGGTAGGCACAGTTGAAGTGGGACAAATTCTCACACGATTTCATCCATTTCTGAACGTTGGCGGGGGCAGAGGTATTGCTGCCTGACCGCAGCAGGGCACAGTAGCACACGATGTCAGCCAGCGAGAGATCGGAGCCCACCAGCCACGCCACCCGGCCCAAAGCCCCGTTCAGCGCCCGCAGAGCGGCGGCCTTCTCTTTACTGCTGCCCTCTGCCAGCTGGAAGATGGCCGTGTCTACCCAGCTGTCCATCAATGTGGCACTCACAGCATCCTGGGGTCCAGGGCTCAGCAGCCTGTACAGGAAGCGGGCGATGTTGCCCTCCCCTTCGATGGGGCACATGTTCTGCACACTGAACTTCATCTGTGGCGCAGGCACATCTTTCCATATGAGTGTGAAGCCGAGCTGGAAGTCGTGGCGGGAGTGGTTGAGGGTATTGCGCGGTCCAAGGCAGGCGAGGAGCTGCGGCGGGATGGCAGTGACGGAAGAGTGCACGTGGACGGCTGACAGCACCTTGTAGCGCTGACACAGCAGGCTGTGTAGCACCAGCAGCGAGAGGGGTGGCTGCGCAGGGTCGGCGTTCACCACAATGTCCCTCAGAGCTCCATAATCCtacaacaaCAGTGAGTCCAGATCAGCAGGGCCAGTGAACACTGCACTGCCCATTCCCTGAGACAGGCTGGCCACGTCGATGTCAGCGTCGGGGGTGGTGATGGTCTTGGTCAGGCCGTCCACAGTGGCTTTCAGCTCATACAGCCGCCTCAAGATCTCATCCTGCCGAGCCTCCAGCGCCCTGACCGCCGGGTCTACCTCCCCATTCTGCAGTGCGCATGTCCACAGCCGCTTTTCTGTTCGTGGATATTCGGTAGCTTGTACATGCAGCTCGGCAAGTCAACCTCCATGTGTCCCGCACTAACTGCTTTTACCTGGTACATCGACATGACCTCTGACGgttactggaaaaataaaactgaaatcagaAATCGCTTTCACTGCTCGTATATCCACTGCCGGTGCTCTCCACACACTTCAACCCAGCAGACCAACCCCCACTGCCAAAGGAAAGACCCAGCCCTCCGTCACATCCGGCAGATAGCAGCCAACTACAGTTCTGCCGGATTTGGGCTCCttcgccaatgggatcggtgcgattctgcagatctgcgcagaactgcggaaactacgctacacgaacgcga

Function

GO: NA

KEGG:

id description
K16194 EIF2AK1; eukaryotic translation initiation factor 2-alpha kinase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145548 lncRNA upstream 16422 10120177 ~ 10121558 (+) True G116214
TU145543 lncRNA upstream 91837 10044452 ~ 10046143 (+) False AMCG00018406
TU145529 lncRNA upstream 96147 10032553 ~ 10041833 (+) True G116199
TU145520 lncRNA upstream 125307 10004273 ~ 10012673 (+) False AMCG00018405
TU145390 lncRNA upstream 390593 9689765 ~ 9747387 (+) True G116088
TU145613 lncRNA downstream 64614 10215387 ~ 10216789 (+) True G116264
TU145625 lncRNA downstream 138221 10288994 ~ 10292221 (+) False AMCG00018422
TU145661 lncRNA downstream 193962 10344735 ~ 10345082 (+) True G116300
TU145662 lncRNA downstream 200191 10350964 ~ 10351562 (+) True G116301
TU145663 lncRNA downstream 205199 10355972 ~ 10357357 (+) True G116302
AMCG00018412 mRNA upstream 17926 10100924 ~ 10120054 (+) True AMCG00018412
AMCG00018415 mRNA upstream 43336 10089422 ~ 10094644 (+) True AMCG00018415
AMCG00018406 mRNA upstream 91457 10044467 ~ 10046523 (+) True AMCG00018406
AMCG00018407 mRNA upstream 112490 10015946 ~ 10025490 (+) True AMCG00018407
AMCG00018405 mRNA upstream 125385 10006099 ~ 10012595 (+) True AMCG00018405
AMCG00018414 mRNA downstream 192 10150965 ~ 10159643 (+) True AMCG00018414
AMCG00018411 mRNA downstream 9691 10160464 ~ 10174296 (+) True AMCG00018411
AMCG00018422 mRNA downstream 107032 10257805 ~ 10292261 (+) True AMCG00018422
AMCG00018425 mRNA downstream 148230 10299003 ~ 10299554 (+) True AMCG00018425
AMCG00018423 mRNA downstream 182748 10333521 ~ 10342424 (+) True AMCG00018423
TU145312 other upstream 525062 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 573576 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 896165 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 936394 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 1443261 8693364 ~ 8694719 (+) True G115789
TU146017 other downstream 1815474 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 2365030 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 3102570 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 3157125 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 3869155 14019928 ~ 14022806 (+) False AMCG00018537

Expression Profile