RNA id: TU145625


Basic Information

Item Value
RNA id TU145625
length 2772
lncRNA type sense_over
GC content 0.39
exon number 2
gene id AMCG00018422
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 10257805 ~ 10292261 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aGGAAGCAGTGAGGACGGGGAGAAGGATTAAAGGCTGAAACCCTCGTCGTCCGCCAAGGTTTCAGTGGACCTGCTGTCACAGAGGGAGTAGCACAGGAAAACACGTCTGGAGAAAAGCCCCATTTTGTAGGATTGCTTCGACCACGTGAGCGGAGAGCTCTTCGCAGTGGGCAGTGCCGGTCCCCTTTCTCTGGGCAGGCCCTGCTTTGAGAAAGGCCGGCAGAAGGGGAGCTGGAGGCGACACTGAGTTACAACAATGAATGAGCcaaacccccccctcccccatttcATTTCCTACGACTTAACGAGACTAGGCTGGTCGATCGCAGGCTGCATTTCCACACAGGCGTCGCTGAGAGCGTGCGTTGGGATTTCAGTGTTCATATTGTTGTGTTCCATTGGGGGGATAAAACCCACCACATGTCTTGGTCAATTCACTGTAAAGATCAAATGTTAATGACAGCACCGATTGCAGTGATCGGTGAGAGAACGCACTGTTACAGAGTGAGGGACACTTGGACTTCCATCCATCCAGTCAGGAGTTTGAGTCACAGCAAAACTTTGCAAACAGGTTTAGAGgcactgcagctgctgctgtcagaatgtattgtatatttgtcCTGAGCTGGTGACAACCAAAGGGAGCTGAAGCCCTGGGGCTGGGTGGCCAGGAATGCCACTTCTAACAACTGTGGTCAAATTTgcttaaaacaaattgtatcGTTTCAGCTTAACTCTGCGCAGCCTTTTCTAACTGCGAGGTGTGAGATAAAGGCAGGTGGTATTTGCCTCTGCTCCAGTCTATGTAAATTAGGGatagcttgtgtgtgtgtgtgtctgtgtgttacgAAACATTCCTAAGCACCTCTCGAGAACCGTTGTAGTCTAAAGGCCGGAATCGATGACCAAAAACGGGTCGCCGAGAGAATTGCAAAGAACGTCCTCTCTGTGTGACCTCGGCAGCAGTTACACAGTTGTGTGTGTTATAGGGTTCTCAAGTGTGGGTCTCTTTTTAAGAATGGGTTTGTGGGGATGTGCCCATAGGAATAGTATCACTacagtctattattattattattattattattattactttattttgtattatcagtGGTTCGCCAAGAATACATTGATCACTCTCAGTTgtaattgtgtgtttctgttgctCAGAGATGAAAAACCAAACCCAAAGCGAGGCAGGCCCGTGTTGTGGACTGGCTGACCTGGCACATCTCCACGTCTGAGTTCTGTTCtcatgcatttcagtgtgaCACAGAGGAGCTGAAGATTCTTGACAATACCagaatgtaatataaataagcTTGGTATCAAGAAAACAAGTGCAATGAagtcgtttttatttttattatcattattaattatattttataggtGGAGGGGATCATCTTTGGGcattcctcccccccccccctcattaAGCTCTAAACGTGCATTAATTTGTAGAGGAGCCTCTGACCTCCTGCTTGGCCACCTGTTCGTAGGGTTTTGTGCACTCATTCAGTGGATTTCAGATGGGGAGAACACCCATCACTTCAAACTGGTCcctcctgtttttttgttttgtcctctAGCTTAACCTTCAGTTGACCTGATAAGTATATTGAAGCGTttcttgtggggaaaaaagataaCAATAAATCCCAGTTACTTCACATATAGGGCAACGCATCTAAAACCTAGATTTGAGAAATGCATAATAGGCTGTTAATTTAGGACCActatataataatcattaataacctttttcttttattaatcaTGCTCTGTAGTTGAGGGATTTTGACTTTCCAAAAATGGTTTAAGATTTAATAATCAAAGTAATAATCGGCcattttttgacatttttgttaGAAACTGGTTAGTCTGCCCTATTGGCAAATTTAAGGCTGGTGTAATTGAGTTTTGCATCAGGATCCCAATAGCTGGAGTCTGAGAAGCAGTagaaaagggggaaataaaaacaaatgtgatccACTTCTGTACCAACCGAAAGAGGTTCTAGACTTTAAGGACACAACTGATATTTTCtatgttttcatataaaatgGTATACAGTAATGATGATATAGGTatagtttaaagaaatatgtaaaGAATGAAACCACAACAAATTCTTCCAAATTTAACCAGTTAAATTCAGATATGTCTTCGTTTGGTAAGACAATAGCTTTCTTTTGGTTAACATCTGGTGGAATCCCAAAGATTGTTTTATAGGTGGTGTACACTTTTCAAAATAAGATGCCAATATGTTGTTAATAGAAGCCCTTTTTATTCAAGTACAGTTGtcactgtatttaaacaataaaaggtaATTACTTTTAATACCAGCAGCCTGTGCTACAGATGATAAACTTgaaattttatttaataaaattctGATGTTTTATTCTATATACATTTGCTTAATCTTGCACATTTGAGAAGTGTAACTTAATGTTGAATGGTACTGCTGTATATAAGTGTTTAATTTTGTCTGTAAATGGGGAATGATGTAACAGAGTCCTAGGTAtgagtttttcattttgtaatttaatcacTACATAAAGGCAACATATCATggtaaaaaataagtataaataaataaataaaatacaaatccagaaataaataaatacaagaacagtgacgaaaaaaaacaaatcaggtcATCCTGTCCTTAAAacgtgtacatttttaaaaattgtaatatttttacttCACATTGATGATCATGCATAGTGTAATgaattgtttataattaaatacactatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145613 lncRNA upstream 72205 10215387 ~ 10216789 (+) True G116264
TU145548 lncRNA upstream 167436 10120177 ~ 10121558 (+) True G116214
TU145543 lncRNA upstream 242851 10044452 ~ 10046143 (+) False AMCG00018406
TU145529 lncRNA upstream 247161 10032553 ~ 10041833 (+) True G116199
TU145520 lncRNA upstream 276321 10004273 ~ 10012673 (+) False AMCG00018405
TU145661 lncRNA downstream 52514 10344735 ~ 10345082 (+) True G116300
TU145662 lncRNA downstream 58743 10350964 ~ 10351562 (+) True G116301
TU145663 lncRNA downstream 63751 10355972 ~ 10357357 (+) True G116302
TU145664 lncRNA downstream 67461 10359682 ~ 10359903 (+) True G116303
TU145722 lncRNA downstream 446065 10738286 ~ 10739175 (+) True G116354
AMCG00018411 mRNA upstream 114698 10160464 ~ 10174296 (+) True AMCG00018411
AMCG00018414 mRNA upstream 129351 10150965 ~ 10159643 (+) True AMCG00018414
AMCG00018413 mRNA upstream 138221 10137980 ~ 10150773 (+) True AMCG00018413
AMCG00018412 mRNA upstream 168940 10100924 ~ 10120054 (+) True AMCG00018412
AMCG00018415 mRNA upstream 194350 10089422 ~ 10094644 (+) True AMCG00018415
AMCG00018425 mRNA downstream 6782 10299003 ~ 10299554 (+) True AMCG00018425
AMCG00018423 mRNA downstream 41300 10333521 ~ 10342424 (+) True AMCG00018423
AMCG00018426 mRNA downstream 139969 10432190 ~ 10440657 (+) True AMCG00018426
AMCG00018429 mRNA downstream 204652 10496873 ~ 10562962 (+) True AMCG00018429
AMCG00018432 mRNA downstream 282675 10574896 ~ 10609128 (+) True AMCG00018432
TU145312 other upstream 676076 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 724590 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 1047179 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 1087408 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 1594275 8693364 ~ 8694719 (+) True G115789
TU146017 other downstream 1674026 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 2223582 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 2961122 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 3015677 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 3727707 14019928 ~ 14022806 (+) False AMCG00018537

Expression Profile