RNA id: AMCG00018441


Basic Information

Item Value
RNA id AMCG00018441
length 696
RNA type mRNA
GC content 0.59
exon number 4
gene id AMCG00018441
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11197116 ~ 11199442 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCGGGGGATACGATGTCGAGCTGTTTGCAGAAGCTCCGGACTACGACTTGATCTGCACGATCTGCCGCGGGGTGTTGCGATGCCCCGTCAGGGTGGCCTGCAACCACGTGTTCTGCAAGAGGTGCATCTTACAGTGGCTGAAGAGACAGGAGACCTGTCCTTGCTGCAGGAAACCAGTGAACCAGAGCTTGATGTTTGTGATGTATAAACTCAGCAAGGCCATCAGCCGCTTACAGATCAAGTGTAAAAATGAGATCCACGGGTGTACGGCCACTTTCCCCCTGTCGGAGCAGTACTGCCACAGCACAGGCTGCCTGTTTGAGCGGACAGCCTGCCCCCATGAGGGCTGCAGTGCCATAGTCCTGCGCAGGGAGCTGGAGGGCCACATGGGGCGCTGCGAGCATTGGAGACAGCCCTGCCAGATGGGCTGTGGAACTGTGCTTTCCCACCAGACCCAGGCCCAGCACAACTGCTACCGGCAGCTGCGGCGCGAATACGAGGCCCAGCAGCAGACCCACCGTGCCATCGCCACCACCCTgcagaagaagatgaagaagatgcagagcaccatggtgcagATGAAAAGGCAGCTGGGCCTGATCTGCGAGAGCCTGGAGGTCATGGACAAccaagaggagggagagggggaggatgCAGGCGAaggcaacagcagcagcagctccagctcctAA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K24148 RNF151; RING finger protein 151

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145745 lncRNA upstream 113327 11061569 ~ 11083789 (+) True G116374
TU145726 lncRNA upstream 217431 10977022 ~ 10979685 (+) True G116358
TU145722 lncRNA upstream 457941 10738286 ~ 10739175 (+) True G116354
TU145664 lncRNA upstream 837213 10359682 ~ 10359903 (+) True G116303
TU145663 lncRNA upstream 839759 10355972 ~ 10357357 (+) True G116302
TU145839 lncRNA downstream 52977 11252419 ~ 11256165 (+) False AMCG00018449
TU145840 lncRNA downstream 52977 11252419 ~ 11256165 (+) True AMCG00018449
TU145882 lncRNA downstream 211363 11410805 ~ 11412070 (+) True G116477
TU145884 lncRNA downstream 216039 11415481 ~ 11415738 (+) True G116479
TU145974 lncRNA downstream 529367 11728809 ~ 11818089 (+) True G116546
AMCG00018443 mRNA upstream 26262 11165943 ~ 11170854 (+) True AMCG00018443
AMCG00018444 mRNA upstream 45927 11143263 ~ 11151189 (+) True AMCG00018444
AMCG00018445 mRNA upstream 57809 11131545 ~ 11139307 (+) True AMCG00018445
AMCG00018433 mRNA upstream 143771 11047982 ~ 11053345 (+) True AMCG00018433
AMCG00018436 mRNA upstream 201095 10992157 ~ 10996021 (+) True AMCG00018436
AMCG00018442 mRNA downstream 3746 11203188 ~ 11209510 (+) True AMCG00018442
AMCG00018449 mRNA downstream 52917 11252359 ~ 11256094 (+) False AMCG00018449
AMCG00018453 mRNA downstream 96907 11296349 ~ 11296846 (+) True AMCG00018453
AMCG00018454 mRNA downstream 118729 11318171 ~ 11326768 (+) True AMCG00018454
AMCG00018452 mRNA downstream 157517 11356959 ~ 11370202 (+) True AMCG00018452
TU145312 other upstream 1584198 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 1632712 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 1955301 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 1995530 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 2502397 8693364 ~ 8694719 (+) True G115789
TU146017 other downstream 766805 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 1316361 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 2053901 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 2108456 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 2820486 14019928 ~ 14022806 (+) False AMCG00018537

Expression Profile