RNA id: TU145840


Basic Information

Item Value
RNA id TU145840
length 3346
lncRNA type sense_over
GC content 0.41
exon number 3
gene id AMCG00018449
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 11252359 ~ 11256165 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGCGTCACATGACCCGCTGCGTGGCCACCTGACCAAACCCGTAAAGACGCGTCCTGACGGCAGCACAGCACCCGAAAGTTTTCTCCCAATTGCAGTTGGGATTTCAAAGACATTTCTTCTGATAGTCTCCAGCAATGTCTTTCTGCTCTTTTATGGGAGGTGAGGTCTTTAAAGATCACTTCAAACCTGGCATCTACGTGTGTGTAAAGTGCGGCCACAGGCTGTTTTCCAGCCGGTCGAAGTACGAGCACTCGTCCCCATGGCCCGCCTTCACGGAGACCCTTCAGGAGGACAGCGTGTCCAAATACGTGGAGAGACCCGGAGCCCTGAAGGTCGGTATCTATCAGCCTGTTACGATCTCCCAGCCCATGTCTGTCTGCTGACATATGCATGCTCTCCATTGCAAACCTGAATACGGTGCATGCAGCATCTGAAATAGCAGAGCAGGACCTCCTGAATCTTGATTCTTCCCTGATTTCTGTGAAAGGTTTTTATAGCACAAAAAGCTGCACAAGTGTGATTGGTTGGCATGCTTTCTGGAAATAAGCAAACTGTCTCCTCACACACAGTATTAGCCCAGCGCTATATTTGCTGATGATTGCATGACCTGAAAACGCACCTTTTCAGACCGCACATGTAGACCCTATGATCTTGCTACTCTTCTCTCATTTTACTTGCAAACTGCTTATGGTAATCTGAacaagttttctgtttaataatcATCCATATTCTAAGGatttcataaatatgtatatgtgcgGTATACTCTGCATTCATGCATACACCCCCACAGCCTTaagtctctgtgtgtttgtttgaggtGTCCTGTGGGAAGTGTGGGAATGGACTGGGTCACGAGTTCCTGAACGACGGGCCCAAGCAAGGACTGTCCCGCTTCTGAATATTCAGCAGCACGCTCAAGTTTGTCCCTAAAGacaaGGTGGACGGACCCAAGGGTGGACAGTAGGGCGATGTGCGATTACCAGAAGAGAAGACATGACTAGGCTGTGCTTTGGGGCCCCGCGTTTTGATAGTGTCTGGACAGTTGATGAAGTGCTCTGGAAAAAAACCCCAAGGGGACGTTCAGGGCACCGATGGGTAAATGGCCACACTAGACAGCAAGAGCGCGATTTCTATTGAATTGTTTCTCCTCCAGGGTCTCGGACTACATTCCTGAAAGGGCACACACTCGTTCCAGTTCGGTTATTTAAATCGGTTATGTTTGAACATTTAAGCAGATTTACTGGGTGATTAATTCATCACCCCATTTCAGTTACTcctaaaattaaaacagtttgtacatgctttttatttttgtatttagtagGAGTAGCTGAACATAATGTATGTATGGGAATGCCAGTGAGTTAGAAACATATGAGCAACTGAAATGGCTGCACgaataatagaaataaaataatccttttATATGGCCTTAAGATATTTTACGGTTGTTGGCTGAAAAGATTGCTTTGATTCATTTGCGATGTCATTTTGCAAACTCAAAGAGAAGCATTGAACCCATCCAGCCAAGCAGACCGATTTAAGTAATCACGAGATGTTTCTGCAACAAAAGATGACTGTGGCCCACCAGGAATTTACTTCAAGACCCCTGCTgtacacagacatgcacataATGAACACACTGCAGGTATTTTAAAAGACTTCTGTCATGTTTGTCTCGAGGAAGGCAAGTGTTTACAATTTGAgtttaatcaataataatgataatgtgtAAAGAGATGCCTTAAGGGttgatttttaaaactttgcttttgactCCCCTCTAATATTAAATCATTAgatctttattaaattattatggaGCAGGAGAGAATCCCTCCCCTCCCTGATGGAACTCAAGATTCCAGAATGTGAGAGTCTTCTGGGATACCCCTGTAATAACATCTGAGCAGGTTTTTATTTCATCAGTCGATAAAATCAACCCCTGGAATTAGAAACAAATGCCGCTACTTTGATTTACgcattcaaatattgttttccattcCGACaaaccctatatatatatttttttttatttcaccatttatttCACTCATTGAATTATTGACACGATGGGGGagtaagtcttttttttttaattttgtcttttgaGAACTTTGGCAATACACACAGGCAAGGAAAGGAACCCATCATTGCCTAACATCATTTCAAGCTTCCATTTCTACGTCAAGGGGATCTTTTGCTTCAATTACTGCTGCTATATCTGTGACAGAGCTAAAATGAGAGGAGAGACCACAACTCATAGGAACAGACCAAGGCTGCATGCAGTGAACTCTGAGTGCTTATTTctaagttgctctggataagggcatctgcctagaaataaataattgtgagATTACACAGacaagaaaataagtaattttaaGCAcatcttcctttatttttaatagtataAAAGAATACTGTATAGGAATAGGTATTGAACCATGGGATTGGGGGTTAAGTAATGTACcgctcatttatttttatactatcCTCCCTaccaaatacaattttaaaagcacttaaaaaaagttttcactATGTTAACTATGGAGACAAAATGACAGGTTACAGCTTTGGAAATGCTAGTTTCCTCTCCAGCAGCACACAAAGCTTCAATTCACTGCATCTCAATATTGACTGTCGGCCTGTGACCAAAAGAATAATACTTTATGTCACGGTAATGTACAGCAGGGAACAGATGAATCCCAGTCTCTGGTCTCTGAACACTGAAACCAAACAGCTCTCTCCTCTTTCTACTTTTATGGTCAGGTCAAGTCAGGGCAGTAGTTAGAGGCTATTTTTCTAAGGGTTTTAGAAATGATCTTTTAATATCACTTGTACACTTGTAAGGAAAATGGGTTTGTAGCAAGCTGTAAATGATTCACAGGAGTGCTTTGCTCTCTGAAATCCAACAGTTCACTGCACACTAAAACAAAGTAAGTTATTTAACATAATCTCCAGCAAAGCAGTTAATCGTCTGTGCCAAAGCGGATGGACTTGAGTTTAAGGGGGTTGAAGTACtgcattgacacacacacagtggataTAACTGGAAAAGACAAGGACTTGTGATCTTCCAGCCAACATAGCTGCTTTCTGGTACCTGGCATAAAGATGTACTCAACTGGACTTTAGCAGTTTAAAtatacgttttattttttttaagccgAATTGTGTAATGCCAAATATCCCTGTTTAGCTCCACAGTTGTCTTAaatactgaaacactgaaataaaaatgattctCAGAAACTCACAAAACACTGTACTACATCATTCATTTTGGAAGTGAGTGCGTTCTGTGTCTTTGCTGCGGCTGAAGCCGATGTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145745 lncRNA upstream 168630 11061569 ~ 11083789 (+) True G116374
TU145726 lncRNA upstream 272734 10977022 ~ 10979685 (+) True G116358
TU145722 lncRNA upstream 513244 10738286 ~ 10739175 (+) True G116354
TU145664 lncRNA upstream 892516 10359682 ~ 10359903 (+) True G116303
TU145663 lncRNA upstream 895062 10355972 ~ 10357357 (+) True G116302
TU145882 lncRNA downstream 154640 11410805 ~ 11412070 (+) True G116477
TU145884 lncRNA downstream 159316 11415481 ~ 11415738 (+) True G116479
TU145974 lncRNA downstream 472644 11728809 ~ 11818089 (+) True G116546
TU146048 lncRNA downstream 870285 12126450 ~ 12126699 (+) True G116601
TU146052 lncRNA downstream 882837 12139002 ~ 12140081 (+) False G116603
AMCG00018442 mRNA upstream 42909 11203188 ~ 11209510 (+) True AMCG00018442
AMCG00018441 mRNA upstream 52977 11197116 ~ 11199442 (+) True AMCG00018441
AMCG00018443 mRNA upstream 81565 11165943 ~ 11170854 (+) True AMCG00018443
AMCG00018444 mRNA upstream 101230 11143263 ~ 11151189 (+) True AMCG00018444
AMCG00018445 mRNA upstream 113112 11131545 ~ 11139307 (+) True AMCG00018445
AMCG00018453 mRNA downstream 40184 11296349 ~ 11296846 (+) True AMCG00018453
AMCG00018454 mRNA downstream 62006 11318171 ~ 11326768 (+) True AMCG00018454
AMCG00018452 mRNA downstream 100794 11356959 ~ 11370202 (+) True AMCG00018452
AMCG00018450 mRNA downstream 115379 11371544 ~ 11377395 (+) True AMCG00018450
AMCG00018451 mRNA downstream 121734 11377899 ~ 11384556 (+) True AMCG00018451
TU145312 other upstream 1639501 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 1688015 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 2010604 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 2050833 9199657 ~ 9201586 (+) False AMCG00018358
TU145016 other upstream 2557700 8693364 ~ 8694719 (+) True G115789
TU146017 other downstream 710082 11966247 ~ 11970778 (+) True G116585
TU146176 other downstream 1259638 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 1997178 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 2051733 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 2763763 14019928 ~ 14022806 (+) False AMCG00018537

Expression Profile