RNA id: AMCG00018477


Basic Information

Item Value
RNA id AMCG00018477
length 1657
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00018477
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12151389 ~ 12163807 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTTATAATAACGCAAGACAGGTTAAATTCAGTTTAGAAATCTTTGAAAAAGCACTTGGAAGCACCGGGAGTGGTATCCATTAAAGACACAGGGAAGTGTTGTTGGTGTGAAGTGTTTTGAGTGAGGTGGACGGATCGGTGCTCTGCAAGCACGGTCTGCCCGGGTTGTGATGTGACGTATTTCCTGCGGAAAGAGGAAGCAGGGGAGTGGGTGCAGTGGATGACAGCGCCACAGCAAAACATAACACAATAGTTCATAATTTTCATCAATTTATACTCACTTGCAATTTAGTAATCTTTCTGCCATGGAGCTGTGTGAAATTCTCTACAACAAAGCCGAATACATCGAAACGGCTTCTGGCAACAAAGTCAGCCGGCAGTCGGTGTTGTGTGGCAGTCAGAACATCGTGCTCAATGGCAAaACCATTGTAATGAATGATTGCATCATCCGGGGGGACCTGGCGAACGTCAGGGTTGGGCGACACTGTGTCATTAAGAGCCGCAGCGTGATCCGGCCGCCCTTTAAGAAGTTTAGCAAAGGTGTGGCCTTCTTCCCCCTGCACATCGGAGACCACGTGTTCATCGAGGAGGACTGCGTGGTCAACGCCGCTCAGATCGGCTCCTACGTCCACATTGGGAAGAACTGCGTCATTGGCCGGCGGTGTGTTCTCAAGGACTGCTGCAAGATTCTGGACAACACTGTCCTGCCGCCGGAGACAGTGGTCCCTCCCTTCACGGTCTTCTCCGGCTGcccagGCCTGTTCACAGGAGAGCTGCCAGAGTGCACCCAGGAGCTGATGATAGACGTCACCAAAAGCTACTACCAGAAGTTCCTGCCCCTCAGTCAGATTTAATGCCCCCCAGCCAGTGTTTAAAAAGGACCAATCATCAACCCCTTGCCCAAATGGTACCCACCTGTTGCTGCTGTGTGAAGGTGGAAGTGCCAGTGTGTGTTAATGCAGAGAGACGATTCTGCCCAGGACTGGGTTTATCCACCACAGGACCTTCTGTGGGCAGCCCACTCTCGGCTCTcaagaaagaagagaaataaCACAAACCACAAACTGAAGTCATGTCAagtctgtatttattatgtatggGAACCTGGTTCCTCCACTGTCTTGTCAATTCAACACTAAAGTGTAACTCATgattttggaaaacaaagagTCATAAAGGGGAGCTATTGCAAACAAATgcttgttattaaaaaatatataaaatacccaaaagtctatatatatatatatatatatatatatgtggattTGAATCCTGTGCTTTTCAGTCTGATAGCTCAGTCCTGACGTACTAAAGATGGTAGCTTAATTTCAAGGCCCGTGTATGATGAGAGATTGTCTCTAGGCAATCTCATtgtacagcacaatacaatgGGAAAATTAATACCAAGATAATTCTACAGCAGTTTATTATCTTATCCAGGGGTAAAATAGCTCCTTGATGAACTGAATAACAAGTTAAATCCCCCCAGATGGCCTATTCAAACTGAGTGTGGTCTGAGGTGGCGGAGGACCTTTTGCAGGAGAGCCCCAAGCGAAACTGGCTCTGGCTGGTGGAGAGCAGTTAGTGTACAGTATCATTTTTGCACCTGAATACTTCCTGAAGCTGCAATGGAGACTCAGAAATGTGCTCGAC

Function

GO: NA

KEGG:

id description
K10427 DCTN5; dynactin 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146053 lncRNA upstream 9254 12139002 ~ 12142135 (+) True G116603
TU146052 lncRNA upstream 11308 12139002 ~ 12140081 (+) False G116603
TU146048 lncRNA upstream 24690 12126450 ~ 12126699 (+) True G116601
TU145974 lncRNA upstream 333300 11728809 ~ 11818089 (+) True G116546
TU145884 lncRNA upstream 735651 11415481 ~ 11415738 (+) True G116479
TU146113 lncRNA downstream 108782 12272589 ~ 12273496 (+) True G116653
TU146114 lncRNA downstream 114623 12278430 ~ 12278840 (+) True G116654
TU146128 lncRNA downstream 123762 12287569 ~ 12319488 (+) True G116667
TU146168 lncRNA downstream 332987 12496794 ~ 12500048 (+) False AMCG00018493
TU146185 lncRNA downstream 379738 12543545 ~ 12588656 (+) False AMCG00018498
AMCG00018478 mRNA upstream 34561 12073105 ~ 12116828 (+) True AMCG00018478
AMCG00018475 mRNA upstream 164335 11967889 ~ 11987054 (+) True AMCG00018475
AMCG00018476 mRNA upstream 185059 11956229 ~ 11966330 (+) True AMCG00018476
AMCG00018471 mRNA upstream 251142 11855520 ~ 11900247 (+) True AMCG00018471
AMCG00018469 mRNA upstream 334341 11755834 ~ 11817048 (+) True AMCG00018469
AMCG00018481 mRNA downstream 22883 12186690 ~ 12187328 (+) True AMCG00018481
AMCG00018482 mRNA downstream 31735 12195542 ~ 12202096 (+) True AMCG00018482
AMCG00018483 mRNA downstream 71204 12235011 ~ 12270627 (+) True AMCG00018483
AMCG00018487 mRNA downstream 130170 12293977 ~ 12312814 (+) True AMCG00018487
AMCG00018493 mRNA downstream 325660 12489467 ~ 12500054 (+) True AMCG00018493
TU146017 other upstream 180611 11966247 ~ 11970778 (+) True G116585
TU145312 other upstream 2538471 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 2586985 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 2909574 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 2949803 9199657 ~ 9201586 (+) False AMCG00018358
TU146176 other downstream 351996 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 1089536 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 1144091 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 1856121 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 1882452 14046259 ~ 14049153 (+) True G117033

Expression Profile