RNA id: AMCG00018483


Basic Information

Item Value
RNA id AMCG00018483
length 3016
RNA type mRNA
GC content 0.57
exon number 22
gene id AMCG00018483
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12235011 ~ 12270627 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCTGACCCGGATGTAGATGCGTAGAGAGGTTTTGCGCGAAATGCGAGTTTGTCCGTTTTCTGAGTTATAGACGGAGAAGCACGAATCAATCAAACAATTTCTATATAAAGGAAGTGTTATGATATTTTTGAGTTAAACCTACGGACAAGCCTTGTAAGAGGTTCAGTCGGTTTGAAAATGGACGAATACGATGAGATGTACGGCATCGAGGATGACTTTGAGCAGCAGTTTGCAGACGAGCTGGAAGCCTTGGCTGAAATAGACCACAAGTCCCCCATCCGAAAGAAGGAGTCAACCTTCAGGACGAAGCCACAGTCGTTCGAGGAGGCAATTGCCGCTGGAGATGTACTTCCCAAGAGCCAGTCTGCTGTGCAAGCCAGTGCCGCCTCGCCCGCTCTTTCCCCTGCTGCTCCCAGGGCTGCTCGGTCCCAGCCAGCAGGGCCACTGCCTCCCCCTCCCGCCTCAGAGGAGAACTGGTTCCCTGAACATCTGCTGGACAGTGGAGAAGCCCAGAcCCCCAAGCCCAAGCGGAGGAGGCACGATGCGGTGAAGAAGTTGACATTTGGGTTGGCAGATGGGGAGGATGACAtcacccctccctcctcccccgAGGATTACTGCAAGCCACAGCTGCAGCCCCACAATGCTCTGGATGTCAGCGGGCTGGCGGAGCTACAGGAGTCTCCCCGCAGAGACGCAGCCAGGCGGCAAGTCCTGCGCCGCCCCCCCCCGGCTGGAGATTACATCAGCATTACAGACTCCTCCGGGAATAGAGTGTACCTGGCCATGAAGGCCGAGGAGAGCGGGCGCCATCTCCAGGTTGTGGAGGAGTCACAGAGACTGACTGAACTGCTTAACAGCCGTATCGACCAGGCTTTCGGGGAGGTGGATGGCAAGGAGACGGAGGAGAGaattgaggaggaggagggagaagggggTGAAGAGCACCAGGAATCAAGTGTCTCTCGGCTCTGGGTGGATAAGTTCTCCCCCCGGCACTTCACGGAGCTGCTCAGTGATGATTTCACAAACAGGTGCCTGCTGAAGTGGCTGAAGCTGTGGGACAAGGTGGTGTTCGGCAGGGAGAAGCCAGTTAAAAAGGCCATTGTGGCAGCAGTTGACAGCAGGCAGTCCCTCTGGCAGCAGAAGGAACAGCAGCAGAACCAGCGCTTCAAGACCAAAACCCAGATCACTGAGGAGATCCTCGAGGCCGAGCTGGACCAGTACAACCGGCCCAAGTACAAGGTGGCGCTGCTGTGCGGGCCGCCGGGTTTGGGCAAGACCACGCTGGCACACATCATTGCAAGGCATGCTGGGTACAATGTGGTGGAAATGAACGCCAGCGATGACCGCAGCGTAGAGCTCTTCCAGAAACGCATTGACACGGCCACGCAGATGAAGTCTGTCCTGGGTGTCGATGAGAAGCCCAACTGCCTGGTGATCGATGAGATCGACGGAGCGCCCACTGCCGCGATCAACGTCCTCCTGGCTACCCTGAACCGCAAGGACACCCGGCAGGAGGATGCGGGCAGCGGGGCAGCGGCCAGCActttgaaaaagaagaagaagaaagagtcCGTGCTGCAGAGACCTATCATCTGCATTTGCAATGACCTGTACGTTCCTGCGTTGCGGCAGTTGCGGCAGCAGGCCTTCATACTGACCTTTCCTCAGACGCAACCCTCCCGCCTGGTTCAGAGGCTCTCCGAGATCTCCAGGAGGCAGGGGATGAAGGCCGACACGGGGGCTCTCATGGCACTGTGCGAGAAGACCGACAATGACATCCGCTCCTGTATCAACACACTGCAGTTCCTGCACGGCCGTGGGCGGAAGCAGGTGGACCAACGGATGGTGCAGTCCATGTCGATCGGGCTGAAGGACCAGAATAAGGGGCTGTTCTCTGTGTGGCAGGAGATCTTCCAGCTGCCCAGAGTCAAGAGGAAGCGGGTTGGGCAGGAGCTGTCTCTGGGCTTGGAGGAGGGGCACCTGCAGGGAGCAGGGGACTCTGTTGGGGGCAGCGTCAACGCACAGAGACTGCAGCACATCCTCCACCTGGCCTCCTCCACTGGGGAATACGAAAAACTCACACAGgggcTGTATGAGAACTTCCTCAGTATGAAGCTGAAAGACCCCAGTCTGCAGGGTGTGTGTAGGGGCCTGGATTGGCTGGGCTTCACAGACATGCTTAGCGAGACAGTGTTCCGTGGCCAGAACTTCTCCCTCTTGAGATACCTGCCCTTCCTGCCCGCCGCCTTCCACATGTTCTTCGCGGCCAACAACGCCCAATCCCGTAAGCAGCAGACTGAGAATGTTTTGATTGCCATGCTGGCCGAGGTCCACCCGTCTGTCCGCAGCCGTTCCTGCCTGCACACCCTCTCCCTGGACATCCTCAGCCTGCTGCTGGACATCATCTGCCCCAGACTGCGGCCGGTGAACCCCCAGCTGTACAGCACTCGGGAGAAGCAGCAGCTGGTGGAGCTGATTGACACCATGCTGACCTACAACCTCACCTACAGGCAGGACCGCACCCCTGAGGGGCAGTACCTCTACGTATTGGAGCCGAATGTGGAGGGGGTGAAGCAGACGAAGGAGATGGAGCCACCCAAAAGTGCAGCGCCCAAAAGTGCAGCGCCCAAACCAGAAATGAGGAACCATCAGCAGAGACTGGAGAACATTGTGAAGCAGGCCGCAGTGGAGACCAGGCCCGAGCTGGATTTCTTTGGACGCACCGTTACCACTAAAGGGAAGATGGTGTCAGCAACCACTTCTGCAGACCCGGCAAAGGCTGCCGTGGAGCCCCAGATTGGGAAGGCGGTGGGCAGCAGCGATGTCTGGTTCCGCTTCAACGAGGGTGTCTCCAATGCTGTCCGGCGCAACATTTACATCAAGGACCTGCTAACATTATGCTTCGTTTTCAAGTATCAAAATTGGAATGCACTGCTGGACAGAGAGAAGACCTTGTTAACCCTTGACTCTTCAGAAGGAGCTGAAAGTCCTAATCTTTTCCTAGTATTG

Function

GO: NA

KEGG:

id description
K11269 CTF18, CHL12; chromosome transmission fidelity protein 18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146053 lncRNA upstream 92876 12139002 ~ 12142135 (+) True G116603
TU146052 lncRNA upstream 94930 12139002 ~ 12140081 (+) False G116603
TU146048 lncRNA upstream 108312 12126450 ~ 12126699 (+) True G116601
TU145974 lncRNA upstream 416922 11728809 ~ 11818089 (+) True G116546
TU145884 lncRNA upstream 819273 11415481 ~ 11415738 (+) True G116479
TU146113 lncRNA downstream 1962 12272589 ~ 12273496 (+) True G116653
TU146114 lncRNA downstream 7803 12278430 ~ 12278840 (+) True G116654
TU146128 lncRNA downstream 16942 12287569 ~ 12319488 (+) True G116667
TU146168 lncRNA downstream 226167 12496794 ~ 12500048 (+) False AMCG00018493
TU146185 lncRNA downstream 272918 12543545 ~ 12588656 (+) False AMCG00018498
AMCG00018482 mRNA upstream 32915 12195542 ~ 12202096 (+) True AMCG00018482
AMCG00018481 mRNA upstream 47683 12186690 ~ 12187328 (+) True AMCG00018481
AMCG00018477 mRNA upstream 71204 12151389 ~ 12163807 (+) True AMCG00018477
AMCG00018478 mRNA upstream 118183 12073105 ~ 12116828 (+) True AMCG00018478
AMCG00018475 mRNA upstream 247957 11967889 ~ 11987054 (+) True AMCG00018475
AMCG00018487 mRNA downstream 23350 12293977 ~ 12312814 (+) True AMCG00018487
AMCG00018493 mRNA downstream 218840 12489467 ~ 12500054 (+) True AMCG00018493
AMCG00018491 mRNA downstream 232396 12503023 ~ 12520331 (+) False AMCG00018491
AMCG00018492 mRNA downstream 259931 12530558 ~ 12539267 (+) True AMCG00018492
AMCG00018498 mRNA downstream 309815 12580442 ~ 12611879 (+) True AMCG00018498
TU146017 other upstream 264233 11966247 ~ 11970778 (+) True G116585
TU145312 other upstream 2622093 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 2670607 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 2993196 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 3033425 9199657 ~ 9201586 (+) False AMCG00018358
TU146176 other downstream 245176 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 982716 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 1037271 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 1749301 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 1775632 14046259 ~ 14049153 (+) True G117033

Expression Profile