RNA id: AMCG00018498


Basic Information

Item Value
RNA id AMCG00018498
length 3363
RNA type mRNA
GC content 0.58
exon number 25
gene id AMCG00018498
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12543545 ~ 12611879 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGGTGTATACAAATGTGTTCCTTCTGCAGATCCCAGTGAGTTTACTGAGCAGTGACATCAATGGAAATCATGAGCAAGCAATATGGAGGCAGAGCTTTCTGCACCACAATGTGCATTGGTCTAGCCTGCACTGGCCTGGTGCCCTACTCACACTGCTGTCTGCACTGGCGCTGCTGGGCTGCCACGCCATTCGTGCTGAAAACAGCGATGGCACTGCACTGGCTGGCAGTGTGGCCCTGCTTCTCCTCCTGGCACTCAGCCTGGCCGCACTGGCATGGCAGCAGCacttgaggagggaggagatgccCAACCGAGTGAAGGCACTGATCCAGGAAATCCATGAGGTCCTGAATCAGCCCCAGATGAGCTGGATGGAGAGCTATGTGAGCCTGTTCTCCCCATGCTCTGATGCCGTGTCGCTGCAGTGGACTTATCGAGACGGCCGCCTGGTTAATTTGCCTGTCAGTCTGCTGGTGGAAGGAGACATCATTGCCCTGAGGCCCGGCACTGCGGCGCCCACAGCTCTCAGGGGCATCCAGGAGGAGGAGCATGTGGTCCTGTCCCGTGGTGATGTCTTCAGCCatctctcctcccctccttcCCCATTGGACAGTGACAGACCCCGCCCACACAGCCTGCTCCATCCACAGCTCTTTAGGGTGACAAAGACGCCTGCCATTGAGACTGTGCAGCAGTGTCTGGAACTGGGGCAGTGGAGGCCAGTCACAGTGCTAGACAACGAGCGCTTCACTGCCCAGAGGCTGCTGGAGAGAGGCTTGACCCCCCTGCTGCTGGTGCTGTTGTTGATGGTGAACCTTGCACGCTACTTCCTAGGAGCTCACAGTGTTGGGCCCTGGCCAGTCCCCCTGCTGCAGTTGCCAGTCAATGGGGTTCTGCCGCTGCTACCCCTAGCCTTCCCATTGCTGTGGCAGCAGGCCTGTGTGCACGGCGAGGTGCAGGTGCTGAGCCACCTGGGAGCCCCTGTGCAGGGCTGGAGGGAGAAGTGCAGGCGTATCTGGAGGCACTGTGTAGGCCTGCTGTGTGGAAAGGCCCTGGCTCTATCCTACACTACGAGCCTCCTCCATAGCCTGGGCTCTGTAACGgTGTTGTGCTGTGTGGATAAGCAGGGGATTCTGTCCTGGCCCACTCCAAGCCCAGAGAAGATTTTGTTCTTCAGCAGACCTTCAGGACTTGGTGGTGACAGCAAGAGGAGCACAAGGGACCCCGAAGAAACCACCCCTCTGCCCGACTCCGGACCTCCAGGCCGCAGTGTGCTGGAGGTGCTCAGCCTGTCCTCGGACCGGCAGACAGACGCATGGGTCCAGTTTGACGACTCCCGCTGGCAGCGCCACACTTCCTCACTGCGTCCGTTGGGCCTTGGCGCCCTGTTGGCCCTCTGTAACCCCCAGGCTGCTGCCAGGGTGTGGTGCCTCGCCGATCACCTGACCCATGCCTCGCTACTAAGGGGGCGGCCTCGATGCCAGCCTGTGTGCCCGCCCTGGGGGCTGTGGTTCAGGCCTTCAGCGCAGGAGCCGTTCCAGCAGCAGATGAGTCTGGCGACCTACACCCTGCCCTCTGTCCCCTGTGCCCAGAACAATTCGCCCTGGCAACCACAGCCCATGGCCATGAAGAGTCTTCCTCTATCTCACATCATCAGCCTGGTGGTCCATAACAGCAACTCAGGGGATGCTCAGCTCTTTTCATACGGCTCAGCAGACACCATCCTGGCAACTTGCGTTGAATTCTGGGATGGCTCAGACCTCCACCCCCTCACCGATGCTGACAGGAAGAAGGTCCTCGATTTTTACCTGCGGTCCTGCATGGCTGGGCACTGCCTGGCTCTGTCTTTTAAACCTCTCCTCCAGACCCTGGACCTTCAGATGGATGACCACTGTGTGGAGATGCCCCATGGCCTTTCTCCCCCAACAGGAGGAGAAAGTGAGGGCAGCCCCCCAGACCGAGAGGAGCCCCTGCCCACCTTGCAGCAGCAGATCTTCCTGGGCCTGGTGTCTTCACAGTACCAGGCTCGGCCTGATGTGGTGCGGCTCATCGCTGGGCTGGACAGCACCTGCATCCGTTTTGTGTACTTCTCACTGGAGGAAGAGGTCAAGAGCAAGTTGTTTGCTGAGAAGAtgggtctggagactggctggAACTGTCACATCTCCCTGCAGTCCGACTGCTTCCCCCTGGACCCCGAGAGCCTGAAAGAGGCGGAAGAACTCGGCGacaagagagaggggggtgaaTTATTGGAGATTCCAGCAATGTGTGAGATGGTGCAGGTGATGCAGGAGTATGGGGAGGTGGTGTGCTGTCTGGGCAGCAGCCaaaatatcaacaacaacacagtcTTCCTTCAAAGTGACATCAGCATCGCTCTGGAGCccctcttcccctcctccagTTGGACCAATCCCAACAAATCAACCCCTCAGTTGTACACAACCCCGCCCCTCCCTGGCTCCTCCCCACTGTCTCCGACTCAGCTCTCCAGCGCCATCTGTGGGCTGCCCTGCACAATCCACCTGGGCTCACAGGAAAACACAACCATTATCCGTCTCATCAAGCAGGCCCGACACACTACTTCTGGCCTCAGGAAGTGCTTCCTGTTCCTCCTGCAGTGCCAGCTCTTCCTGGTCCTCATCCAGttTCTGGCCTGCCTGTGTCAGCTCCCACCACCCCTGGGCACAGGTGATGTGCTTTGCCTCTCATGTGTCCACTTCCCCCTCCTCAGCTCTTACCTCTCTCTTCTCAGCCTGTCTCTCCTGGGCAAGCCTGTGGACAGCGGTGTCATGAAGGTGCCCACTGGGAAAAACCTACGCTTTCTGCCCAAGAAGACCCAGCAGCTGTTTGTGGTCTACTTCCTGGTGAAGTTCGGTCTGACTGTCTGCACCTACCTGGCGTGTTTTGGTCTGATGCTCCACGAGTTCTGTCTGAAAATCCACCAGGAGTCCGAAGCACTTTGCCATCTAACTGTTCTCCTGGCGGGATcctctgtGAACTCCACGGGCCCTGACTGGTTTGGAGAACATGCTGATGGGCTGGCTCTGGCCCAAAAGACCATCGCCTTCTTCATCCTGCTGAACGCCAGTGAGCACACTGCCCTGCTGCAGCTCACCCTACAGGTTTCTATAACCACAGCCGCCTGCCTCCTGTGGGCTGATCCCAGCCCCCAACTTACCTTTGACATCACTGACATCCCAGCAGCCACCTGGCTCCTGGGCTCCCTGTGGCTCCTGCCCCTGATGTGCATCAATGAATGGATAAAACTCCATGAGATCAGGACGAGAGAGAGGTACCACAAGAGACGGAAGCTGCAGTTTGACACCAAGCTGGGGATGAACTCTCCATTCTGA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146168 lncRNA upstream 80394 12496794 ~ 12500048 (+) False AMCG00018493
TU146128 lncRNA upstream 260954 12287569 ~ 12319488 (+) True G116667
TU146114 lncRNA upstream 301602 12278430 ~ 12278840 (+) True G116654
TU146113 lncRNA upstream 306946 12272589 ~ 12273496 (+) True G116653
TU146053 lncRNA upstream 438307 12139002 ~ 12142135 (+) True G116603
TU146210 lncRNA downstream 88622 12700501 ~ 12700765 (+) True G116725
TU146213 lncRNA downstream 267707 12879586 ~ 12883914 (+) True G116728
TU146255 lncRNA downstream 293221 12905100 ~ 12958552 (+) True G116765
TU146256 lncRNA downstream 293221 12905100 ~ 12919130 (+) False G116765
TU146261 lncRNA downstream 321061 12932940 ~ 12934564 (+) True G116769
AMCG00018492 mRNA upstream 41175 12530558 ~ 12539267 (+) True AMCG00018492
AMCG00018491 mRNA upstream 60111 12503023 ~ 12520331 (+) False AMCG00018491
AMCG00018493 mRNA upstream 80388 12489467 ~ 12500054 (+) True AMCG00018493
AMCG00018487 mRNA upstream 267628 12293977 ~ 12312814 (+) True AMCG00018487
AMCG00018483 mRNA upstream 309815 12235011 ~ 12270627 (+) True AMCG00018483
AMCG00018497 mRNA downstream 7481 12619360 ~ 12648880 (+) True AMCG00018497
AMCG00018500 mRNA downstream 102228 12714107 ~ 12738068 (+) True AMCG00018500
AMCG00018501 mRNA downstream 172812 12784691 ~ 12819143 (+) True AMCG00018501
AMCG00018502 mRNA downstream 224345 12836224 ~ 12878881 (+) True AMCG00018502
AMCG00018503 mRNA downstream 273308 12885187 ~ 12904501 (+) True AMCG00018503
TU146176 other upstream 60561 12515803 ~ 12519881 (+) True AMCG00018491
TU146017 other upstream 609664 11966247 ~ 11970778 (+) True G116585
TU145312 other upstream 2967524 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 3016038 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 3338627 9239811 ~ 9241815 (+) True AMCG00018360
TU146344 other downstream 641464 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 696019 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 1408049 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 1434380 14046259 ~ 14049153 (+) True G117033
TU146633 other downstream 1529498 14141377 ~ 14145578 (+) False AMCG00018538

Expression Profile