RNA id: AMCG00018501


Basic Information

Item Value
RNA id AMCG00018501
length 2253
RNA type mRNA
GC content 0.54
exon number 9
gene id AMCG00018501
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12784691 ~ 12819143 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTGCTGTCTGTGACCAGTGGACACCTTCCTTAACTACCTGCTGCACCTGGTTCGAGCACGTCAGCATGCTGGTCATCCTCCTGAACTGCGTGACTCTGGGTATGTTCCAGCCCTGCGAGGACCTCAAGTGTCAGTCCGATTGGTGCACCATCCTGCAGgCATTTGATGACTTTATTTTTGCCTTCTTCGCTGTGGAGATGGTCATCAAGATGTTGGCTCTGGGGATTTTTGGGCAGAAATGTTACCTGGGTGATACGTGGAACCGTCTGGATTTCTTCATCGTCATGGCAGGGATGATGGAGTACTCTTTAGACGGCCACAATGTCAGCCTGTCTGCCATCCGCACTGTTCGTGTGCTCAGACCTCTCAGAGCCATTAACAGAGTTCCCAGTATGCGAATACTGGTGACCCTGCTCTTAGATACCCTGCCTATGTTAGGCAATGTCCTTCTGCTTTGTTTCTTCGTTTTCTTTATATTTGGAATCGTCGGAGTGCAACTGTGGGCCGGTCTGCTGAGAAATAGGTGTTTTTTAGAAGACGTAAAAACGGTTTACAATTTGTCCTTAAGCCCTTACTATAAGCAAGAGGAAGGGGAAGACAACCCCTTCATCTGCTCCACCATCAGAGACAATGGCATGCTTCGCTGCAACAACATTCCCCGACTCAAAGAGAACGGCGTGGAGTGCTTCCTCAGCATGGACTTTGAAGGCCACGCCCCCTATGGCCTTGACCTGGCCACCAAGAACGGGTGCGTCAACTGGAACCAATATTACAACGTATGCAAGACTGGGGAACTCAACCCGCACAAAGGGGCTATTAACTTTGATAATATTGGATATGCCTGGATTGCTATTTTTCAGGTGATAACTTTGGAAGGATGGGTGGACATCATGTATTATGTTATGGATGCTCATTccttttacaattttatatattttatattgcttaTAATAGTCGGCTCCTTCTTTATGATTAACCTGTGCCTGGTTGTGATCGCAACCCAGTTCTCGGAGACAAAACAGAGGGAGAATCAGCTGATGCAGGAGCAGCGTGCCCGCTACCTGTCCAACGACAGCACCCTGGCTAGCTTCTCAGAGCCGGGCAGCTGCTACGAGGAGCTGCTCAAGTACATCAGCCACCTGTACCGCAAGGTGAAGCGCAGGGTGGCACGGCTCTACAGCACCTGGCAGAACAAGAGGCGGAAGAAAGTCAACCCAAACGGCTTGGGTGGGGCAGGTGGTGTGAATGGGCACAGCCGGCGGCGGCGCAACAAGCGACGCATCCGCTCCATCCACCACCTcatccaccaccaccaccatcaccaccaccaccactatcACATCAGCAACGGCAGCCCCTGCGGCAGCCGGGGAGCCTCGGAAATCTGCGACGTCCTGGAGATGAAGACCGTGAAAGCAGGCAACCAGTTGATGCTGCAGCCCCCATCCCCCAACCTGCAGAGCTCCTCATCTGGCACAGAGTCAGTCCACAGCATCTACCACGCCGACTGTCATTTCCAGGGGCCCCAGGTCAGGCGCAAGTCTTCCAGTATGGCCGGGAACATGCGGCTGATTGGTGGTCTCAATGGGGGCATGAACTACCCCACCATCGTCCCCTCTATGGCCTGCAGCCGAAACAGCACGACCCCCAAGAACAAGGGCAAGAAGAGCAGCTCTCACCCTGCGAGCCTCAGCCGAGGATCAGGCAACCTCAGCATTCCTGACCCTTATGGGAAGCTGCACCAGCTCGTTGGGGAACACGGGGTGTGCCGAGGGTCCAGCCGCCTCTCGGGCCTGAGTATACCCTTCCCTGTGGGCAGCTCTGTGCCCAGCCGGCTGTCCTGTGAGCTGGTGAAGTGCCCGTACTGTGCCAGCGCCCTGGAGAAACCCGACCTGGATCTCAGCGACTCTGACAGCGGAGACTCGGACGCCGACGTGGTCTACGAGTTCAACCAGGAGCTGCGGCACGGGGCCGAACACAAGGGCTGCCACCCCAGCCGGCAGCGGAAGCAGAAGGGGAAGAACCGCGTGGTACACTGCTGGAATGTGTTCTGCAACAAACTGAAACGCATCGTAGacagtaaatattttaaccGCGGGATTATGATCGCCATACTGATCAACACTCTGAGCATGGGCATCGAGTACCACGAGCAGGGCTTCAGTCGTCTTCAATCATCACAAAATAATGTTAGCAGGATTCCCTGGGTGGTTATAAAGGAAGGCTATTACTGTAACTGTCAGTGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146210 lncRNA upstream 83926 12700501 ~ 12700765 (+) True G116725
TU146185 lncRNA upstream 196035 12543545 ~ 12588656 (+) False AMCG00018498
TU146168 lncRNA upstream 284643 12496794 ~ 12500048 (+) False AMCG00018493
TU146128 lncRNA upstream 465203 12287569 ~ 12319488 (+) True G116667
TU146114 lncRNA upstream 505851 12278430 ~ 12278840 (+) True G116654
TU146213 lncRNA downstream 60443 12879586 ~ 12883914 (+) True G116728
TU146255 lncRNA downstream 85957 12905100 ~ 12958552 (+) True G116765
TU146256 lncRNA downstream 85957 12905100 ~ 12919130 (+) False G116765
TU146261 lncRNA downstream 113797 12932940 ~ 12934564 (+) True G116769
TU146267 lncRNA downstream 227974 13047117 ~ 13048094 (+) True G116775
AMCG00018500 mRNA upstream 46623 12714107 ~ 12738068 (+) True AMCG00018500
AMCG00018497 mRNA upstream 135811 12619360 ~ 12648880 (+) True AMCG00018497
AMCG00018498 mRNA upstream 172812 12580442 ~ 12611879 (+) True AMCG00018498
AMCG00018492 mRNA upstream 245424 12530558 ~ 12539267 (+) True AMCG00018492
AMCG00018491 mRNA upstream 264360 12503023 ~ 12520331 (+) False AMCG00018491
AMCG00018502 mRNA downstream 17081 12836224 ~ 12878881 (+) True AMCG00018502
AMCG00018503 mRNA downstream 66044 12885187 ~ 12904501 (+) True AMCG00018503
AMCG00018507 mRNA downstream 115453 12934596 ~ 12943295 (+) True AMCG00018507
AMCG00018508 mRNA downstream 139569 12958712 ~ 13031788 (+) True AMCG00018508
AMCG00018506 mRNA downstream 213863 13033006 ~ 13043686 (+) True AMCG00018506
TU146176 other upstream 264810 12515803 ~ 12519881 (+) True AMCG00018491
TU146017 other upstream 813913 11966247 ~ 11970778 (+) True G116585
TU145312 other upstream 3171773 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 3220287 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 3542876 9239811 ~ 9241815 (+) True AMCG00018360
TU146344 other downstream 434200 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 488755 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 1200785 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 1227116 14046259 ~ 14049153 (+) True G117033
TU146633 other downstream 1322234 14141377 ~ 14145578 (+) False AMCG00018538

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050445 False 7875 mRNA 0.48 33 NC_007114.7 39853788 ~ 39952441 (+)
grasscarp (Ctenopharyngodon idella) CI01000046_04136250_04185791.mRNA True 7091 mRNA 0.50 33 CI01000046 4135855 ~ 4185848 (-)