RNA id: AMCG00018507


Basic Information

Item Value
RNA id AMCG00018507
length 2966
RNA type mRNA
GC content 0.40
exon number 13
gene id AMCG00018507
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12934596 ~ 12943295 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGATGTGAAAGCGCTCCCGCTTCCGCTGGATGATGTCAGCTGCAGATGCATGGGGCACTGGGGCACAGTAACATCTAGAGTATATCACTCTTCTTCCAAATTAATGCGTTTTTCCAATGGAAGtcagcaaaataaacaagtaatttCTTCATCTGTGCAAACGGCACGTGCTTAACACACAGTATATTAAGCAGATCGATTTAAGTGCATTAGCGCAGCCTTTTGGGACATCGACATTTTTCTTATTGGCGTTTATTTCGAAACTTAAATCACTGAAGCTGAGAAAATGGGGATCCTGGAGAAGATATCGGACATCGAGAAGGAGATCGCACGGACGCAGAAAAACAAAGCAACGGAGTACCATCTGGGGTTGCTGAAAGCCAAGCTTGCGAAGTACAGATCCCAGTTGCTGGAGCCCTCCAAATCAGCCGGGGCCAAAGGGGAGGGCTTCGATGTCATGAAATCTGGAGATGCCAGAGTGGCGCTTATCGGGTTCCCCTCTGTGGGAAAGtcCACATTTCTCAGTCTAATGACATCTACTGCCAGTGAAGCTGCCTCTTATGAATTCACAACTTTGACCTGCATCCCTGGTGTTATTGAGTATAAAGGAGCCAACATTCAGCTATTGGATTTGCCTGGTATCATTGAAGGTGCCGCACAAGGAAAGGGTAGAGGGAGGCAAGTCATTGCTGTTGCCAGGACTGCTGATGTTGTCATAATGATGCTGGACGCCACAAAAGGAGATGTTCAGAGGGAATTGTTGGAAAAGGAGTTGGAATCTGTAGGAATTAGACTCAACGTGGCAAAACCTAACATATATTTCAAGCCCAAGAAGGGTGGAGGACTCTCCTACAACTCCACAGTCCCCCTGACCCAGTGCTCTGAAAAACTTGTACAGCTCATTCTACACGAGTACAAAATCTTCAATGCGGAGGTTTTGTTCAGGGAAGACAGCAGTCCTGATGAGTTCATCGATGTGATCGTTGGGAACAGAGTTTACATGCCTTGCTTATATGTGTACAATAAAGTCGATCAAATCTCCATGGAAGAGGTAGACCGTTTGGCCAGAAGACCAAATAGTGTGGTCATCAGCTGTGGAATGAAACTAAATCTAGATTACCTTCTGGAGACGTTGTGGGAGTACCTGGCACTTATCTGCATCTACACAAAGAAGAGAGGAGAGAGGCCAGATTTCACTGACGCAATCATCATGAGGAGAGGAGCTTCTGTAGAACATGTGTGCCATCGAATTCATAGGACGCTAGCAAGCCAGTTCAAGTACGCTCTGGTGTGGGGAACAAGCACAAAGTACAGTCCTCAAAGGGTTGGGCTGACGCACATCATGGAGCACGAAGATGTCATCCAGattgtgaagaaataaatagcATCTGTTTTCACTGATCACCATGCAAACCAGACACAAGTCTTAAAGACTTCTTCAAAAGTGACCATACTCGTGATCCATACTTGggaaatgtgttgctttttttaagCCTATTTACAACACACTCTctatagaaaaaaagaaagctagcagatttttattgtatgtactaaataaacaacacatccATTTATGTGATCCAAATTGAGAAATTCTGTCAATGCTTGAAGTAGCCAGTTTAACTTAGTGTATCCATGCTTGCTCATCAAATGCAATTAAggtaaaagacaaaaacaaatacaacatttaacaATGTAGATTTGCcttctaatttatttagtttacgCTATTCTGGACTTACTATTAAGTACTGCAACCTCTCTGCTTGACATCTTTGATTTTGAGTGAGTAAAATCAGTTTATATAAGGTGTGTTTCAAGATGGTACTAATTTTTGAAGATGTGAAACTAATGTCTCAATGGGTTACTTTATTTTGCTTCCTTTATGACTTCTTGGGACATCTCACATATGACTTCATGAAACATTGACAGGTAAATGTCATGTACCAGCCTGTGATTTGAGAAAGTATAAAATAGGACATCAATGGGAAAATGTGAGAAAATCAAAGGGCaccataataatgattaataattctgtattcatatttaattacgGTCAAATGGGGCGTGGGTGTAATGGGCCGGACATATTgccagaaacaacaacaaccaaagaTAGAATAAAGAAACTAGAACAGATTGCAAGTTTAAAAAGGCCTAGAAGGCAACCACAGAAAAGATGCGAAGATTAAATAAGAATTTGCTGGCGAGACCTGGAAAACAGATGCTGTACATGGAAAGAAGTGGGCATCTTGAAGTCTTCAACCAGAAAATTATAGgtaaaggctgctgctgctgatatagGCCTATAGTGTGTatatctatgtgtgtatgtatatatttgacaCAATGCATCACTTCTCACAAATGTCACGTTATGTAATAAGTGTTctattgtatatatgtacagtactttAACAGAGCACAACATAAAAACTTAGATAAAATGTAAGCCAAGGTGCAATTAAGTCCATACATAAAAGAACAATAATCGTCAACGGCTGCAATATAACGTGTTATTTTTGACGTTCTGAGTTACGTTACCAATGTTGAAATAGGTCTGATTCCAGTTAATGAGTTTGAGGCAATTGCCCCCCATTGCCGGTGTACAACTGTCAGAGATTATAACAAATCTCTTTAACGAAGTGCAGAGTTCAAAGCTTATTCACAAGCTTAACTGTCAGGTTCCAATGTAATCTGTAGTCAGTAATGAAAGTGATTCACAATCCAGGTATTTTATTGTTGGAATATAAAACGCACAGTAAGATTTGGAAAAGGAGCAGATATCTCTTGCAGCCGAACAAGCTCACAGGTTTTCAAACAAGGTAAAACCTCTAATGtatccaatttaatttaataaatatgaaaataaaataattttgcaatGTAGTTGTTTTTGAGCAGGTTAAAAATCTCTTTAACCTgaagtataatgtattatttaaaaatataagtagccaaa

Function

GO:

id name namespace
GO:0005525 GTP binding molecular_function

KEGG:

id description
K06944 K06944; uncharacterized protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146261 lncRNA upstream 32 12932940 ~ 12934564 (+) True G116769
TU146256 lncRNA upstream 15466 12905100 ~ 12919130 (+) False G116765
TU146213 lncRNA upstream 50682 12879586 ~ 12883914 (+) True G116728
TU146210 lncRNA upstream 233831 12700501 ~ 12700765 (+) True G116725
TU146185 lncRNA upstream 345940 12543545 ~ 12588656 (+) False AMCG00018498
TU146267 lncRNA downstream 103822 13047117 ~ 13048094 (+) True G116775
TU146286 lncRNA downstream 186443 13129738 ~ 13215352 (+) True G116790
TU146409 lncRNA downstream 423345 13366640 ~ 13367028 (+) True G116882
TU146490 lncRNA downstream 722728 13666023 ~ 13691367 (+) True G116941
TU146532 lncRNA downstream 896421 13839716 ~ 13839971 (+) True G116975
AMCG00018503 mRNA upstream 30095 12885187 ~ 12904501 (+) True AMCG00018503
AMCG00018502 mRNA upstream 55715 12836224 ~ 12878881 (+) True AMCG00018502
AMCG00018501 mRNA upstream 115453 12784691 ~ 12819143 (+) True AMCG00018501
AMCG00018500 mRNA upstream 196528 12714107 ~ 12738068 (+) True AMCG00018500
AMCG00018497 mRNA upstream 285716 12619360 ~ 12648880 (+) True AMCG00018497
AMCG00018508 mRNA downstream 15417 12958712 ~ 13031788 (+) True AMCG00018508
AMCG00018506 mRNA downstream 89711 13033006 ~ 13043686 (+) True AMCG00018506
AMCG00018511 mRNA downstream 144166 13087461 ~ 13088726 (+) True AMCG00018511
AMCG00018510 mRNA downstream 157308 13100603 ~ 13123386 (+) True AMCG00018510
AMCG00018509 mRNA downstream 219362 13162657 ~ 13166145 (+) True AMCG00018509
TU146176 other upstream 414715 12515803 ~ 12519881 (+) True AMCG00018491
TU146017 other upstream 963818 11966247 ~ 11970778 (+) True G116585
TU145312 other upstream 3321678 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 3370192 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 3692781 9239811 ~ 9241815 (+) True AMCG00018360
TU146344 other downstream 310048 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 364603 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 1076633 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 1102964 14046259 ~ 14049153 (+) True G117033
TU146633 other downstream 1198082 14141377 ~ 14145578 (+) False AMCG00018538

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051923 False 1627 mRNA 0.44 12 NC_007114.7 40154241 ~ 40162843 (-)
grasscarp (Ctenopharyngodon idella) TU225257 True 452 lncRNA 0.39 2 CI01000046 4030781 ~ 4031323 (-)