RNA id: AMCG00018510


Basic Information

Item Value
RNA id AMCG00018510
length 2487
RNA type mRNA
GC content 0.58
exon number 16
gene id AMCG00018510
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13100603 ~ 13123386 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTATTATTCTACTCAATTTCTCTTTTTATGAGTTCAGTGTTCCAGAGGACTATAAAAGTGGGAAATCTCTCGGCCCAGTCGAGTCTCTACAGGAACACCCCCAGAACCCCAGCAAAATCCTCATTGGGTACAGCCGTGGCCTAGTGGTACTGTGGGACCAGACCACAAGACAGGTGGACAACCTCTTCTTGGGGAACCAGCTCGAGAGCCTGGGCTGGGAGAGCAGTGGGAAGACGTTCGTGAGCTCCCACAGCGATGGAGGGTACATGGTCTGGGCGGTGAACAGCAGCAGCCCCCGCACACAGCAGCCCGTCAGCTCAATCATACCTTATGgtcCCTTTCCCTGCAAAGCCATTAACAAGATCCTATGGAGGACAAGTGAATCAGGGGCCCCCATTGTGCTTTTCAGTGGTGGCATGCCCAGGGCCAGCTATGGAGACCGGCACTGCGTGACTGTGCTGCAGGAAAAGACACAGGTCACTCTTGACTTCACCTCTCGAGTCATTGACTTCTTCACCATCCACAGCACCGATGGCGCCAAGGATTATGACAACCCGGCTGCCCTGGTGGTCCTGCTGGAAGAGGAACTGGTGGTGATTGATCTCCAGACCCCAGGCTGGCCCACCATTCCCTCCCCCTACCTGGCTCCTCTGCACTCCTCTGCCATCACCTGCTCCTACCACATCTCTAACGTGCCCACCAAGCTGTGGGAGAGGGTGCTGGCTGCGGGGCAGCAGCAGAGCCCGCCACAGACACATGTGAAGTGGCCAATCAATGGGGGGAAGAATTTAGCTCCTGATCCAAAACACAAAGGCCTGCTGTTGACTGGCCATGAAGACGGCACGGTGCGGTTCTGGGATGCCTCTGGGGTCTCTCTAAAGCCCCTGTACAAGCTGAGCACCGCCAACATCTTCCAGACAGACTGCGACCACAATGACAGCCTGACACAGCCGGGAGAGGAGGAGTGGCCCCCCTTCAGAAAGGTTGGGTGCTTCGACCCATACAGTGACGACCCGCGGCTGGGTATCCAGAAGATCTCTCTATGTAAATACAGCGGGAAGCTGGTGGTGGCTGGGACAGCGGGGCAGGTCCTGGTGATGGAGGTCAACGAGGAGATGTCTGATCACTTGATTAACACGGCCACTGTGGACCTACTCCAGGACCGCGAAGGCTTCAGCTGGAAAGGTCACGACCGGCTCGCCCCAAAGAACGGACCAATCAGCTTCCCGCCGGGCTTCCATCCCATCATCCTGGTGCAGTGCCTGCCCCCAGCTGCCGTCACCGCCGTGACACTGCACGCAGAGTGGAACCTCATTGCCTTTGGGACCAGCCATGCCATGGAGGGCCCACTGTCTCGGGTGAAGTCCCTGAAGAAATCCCTGCGTCAGTCCTTCAGGAGAATCCGTAAGAGCCGAGTGTCAGGGAAAAAGCGAGTGGTCATCAACAGCCCGACCAGCAAGGTCCAGGAGGCCAATGCCCAGCTGGCGGAGCAGGCGGGGCCGGCGGACGTGGAGGTGGCGCCGGTGCAGCGGAGGATAGAGCCGCGCTCTGCCGATGACTCGCTGTCCGGGGTGGTGCGCTGCCTGTGCTTCGCTGACACGTACCTGAGAGACGGGACGCACCATGGCCCAACGATGTGGGCGGGTACCAACTCGGGCTCGGTGTACGCCTATGCCCTGGAGGTGCCCTCTCTGGAGAAGTTCTCGGAGCAGAGCGTTGAGGCTGTACTGGGCAAGGAGATCCAGCTGATGCACCGGGCACCTGTGGTGTCCATTGCGGTGCTGGACGGCCGGGGGAACCCGCTGCCCGAGCCCTACGAGGTGTCGCAAGACCTGGCCAAGGCCCCCGACATGCAGGGCAGCCATTCTGTCCTCATCGCCTCAGAGGAGCAGTTCAAGGTTTTCACACTGCCCAAAGTTAGTGCCAAGACCAAGTTCAAGCTGACGGCCCACGAGGGCTGCCGGGTGCGGAAGGTGGCGCTGGCGAACTTCGGCAGTGTGTCGTCCGACGATTACTCTGAGAATGGCCTGATGTGTCTTACCAACCTGGGCGACATCCATGTGTTCAGCATCCCGGGACTGCGACCACAAGTCCGCTATGACTGCATCCGCAAGGAAGACATCAGTGGAATCGCCTCCTGCGTCTTCACCAAGACTGGCCAGGGTTTTTACTTGATTTCTCCCTCCGAGTTTGAGCGTTTCTCCCTGTCTGCACGAGTCATCACAGAGCCGGTGTGTACTGTGGATTTGGACAGACCTCATGACTCCACGGCTCACAGCAACAACACACCCGGGTCACTTCAGGCAAATGGAACTCACAAAGTACCGAGTGCCAATGATAGTCACTCCCTGGGGGAGGCAGAAGGAGTTCTGGAAGAGATCCAGGCGGCTctgtcttctcctcctctcGACTCCCCCAACAGCAGTGCTGACATCACACTCGACACCACGGGGGACATCACAGTGGAGGACGTCAAAGACTTCTTA

Function

GO:

id name namespace
GO:0003407 neural retina development biological_process
GO:0008593 regulation of Notch signaling pathway biological_process
GO:0048919 posterior lateral line neuromast development biological_process
GO:0016323 basolateral plasma membrane cellular_component

KEGG:

id description
K06094 LLGL; lethal(2) giant larvae protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146267 lncRNA upstream 52509 13047117 ~ 13048094 (+) True G116775
TU146255 lncRNA upstream 142051 12905100 ~ 12958552 (+) True G116765
TU146261 lncRNA upstream 166039 12932940 ~ 12934564 (+) True G116769
TU146256 lncRNA upstream 181473 12905100 ~ 12919130 (+) False G116765
TU146213 lncRNA upstream 216689 12879586 ~ 12883914 (+) True G116728
TU146286 lncRNA downstream 6352 13129738 ~ 13215352 (+) True G116790
TU146409 lncRNA downstream 243254 13366640 ~ 13367028 (+) True G116882
TU146490 lncRNA downstream 542637 13666023 ~ 13691367 (+) True G116941
TU146532 lncRNA downstream 716330 13839716 ~ 13839971 (+) True G116975
TU146533 lncRNA downstream 723504 13846890 ~ 13847092 (+) True G116976
AMCG00018511 mRNA upstream 11877 13087461 ~ 13088726 (+) True AMCG00018511
AMCG00018506 mRNA upstream 56917 13033006 ~ 13043686 (+) True AMCG00018506
AMCG00018508 mRNA upstream 68815 12958712 ~ 13031788 (+) True AMCG00018508
AMCG00018507 mRNA upstream 157308 12934596 ~ 12943295 (+) True AMCG00018507
AMCG00018503 mRNA upstream 196102 12885187 ~ 12904501 (+) True AMCG00018503
AMCG00018509 mRNA downstream 39271 13162657 ~ 13166145 (+) True AMCG00018509
AMCG00018514 mRNA downstream 64537 13187923 ~ 13196197 (+) True AMCG00018514
AMCG00018516 mRNA downstream 111815 13235201 ~ 13237686 (+) True AMCG00018516
AMCG00018515 mRNA downstream 123148 13246534 ~ 13252245 (+) True AMCG00018515
AMCG00018520 mRNA downstream 197964 13321350 ~ 13346877 (+) True AMCG00018520
TU146176 other upstream 580722 12515803 ~ 12519881 (+) True AMCG00018491
TU146017 other upstream 1129825 11966247 ~ 11970778 (+) True G116585
TU145312 other upstream 3487685 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 3536199 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 3858788 9239811 ~ 9241815 (+) True AMCG00018360
TU146344 other downstream 129957 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 184512 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 896542 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 922873 14046259 ~ 14049153 (+) True G117033
TU146633 other downstream 1017991 14141377 ~ 14145578 (+) False AMCG00018538

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000046_04098044_04120141.mRNA True 4784 mRNA 0.47 18 CI01000046 4096231 ~ 4120352 (+)