RNA id: AMCG00018534


Basic Information

Item Value
RNA id AMCG00018534
length 2097
RNA type mRNA
GC content 0.51
exon number 16
gene id AMCG00018534
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13885780 ~ 13902661 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTCTCCATCAGTTTCTTCTGGAACCCATCACCTGCCATGCGTGGAACAGGGACAGAACCCAGATCGCTATAAGTCCCAATAACCATGAAGTCCATATCTACAAAAAGAGTGGCAACCAGTGGGTGAAAACCCATGAATTGAAGGAGCATAATGGACACATCACAGGCATTGATTGGGCCCCCAAAAGTGATCGTATTGTGACTTGTGGTTCAGACCGTAATGCCTATGTTTGGAGCCAGAAAGATGGCATTTGGAAACCAACTTTGGTCATTCTGAGGATTAACCGTGCCGCCACGTTTGTCAAATGGTCTCCCCTGGAGAATAAGTTTGCAGTGGGTAGTGGAGCTCGTCTGATCTCAGTTTGCTACTTTGAGTCTGAAAATGATTGgtGGGTTAGTAAACACATCAAGAAACCCATTCGTTCCACAGTCTTGAGTTTAGACTGGCATCCAAACAATGTGCTCCTGGCCGCTGGGTCTTGTGACTTCAAATGCAGAGTGTTTTCTGCCTACATCAAGGAAGTGGATGAAAAACCAGCACCCACTCCCTGGGGCTCCAAGATGCCCTTTGGTCAGGTGATGGCCGAGTTTGGGGGCGCTGGCAGTGGAGGATGGGTTCACAGCGTTTGTTTCTCTGTCAGTGGGAATCGTTTAGCCTGGGTTAGCCATGACAGCACGGTGTCTATGGTAGATGCTTCCAAAAGCATGATGCTTGCTCAGCTGAAGACGGAATTCCTTCCTCTGCTGAGCGTTGTCTTTGTCTCGGAGAGCAGTGTTGTGGCAGCGgGTCATGATTGCTGCCCGATGCTGTTTAACTGCGATGATCATGGGAGCCTGAGCTTCATGTCTAAGTTGGACATCCCCAAGCAGAGCATCCAGCGCAACATCTCCGCCATGGAGCGCTTCCGCAACATGGACAAGAGGGCCACAACTGAGGACCGCAACACCTCGCTGGAGACACTGCACCAAAACAGTATCACCCAAGTGTCTATCTATGAAGGAGACAAAAGAGATTGTCGTAAATTCTGCACTACAGGAATTGATGGAGCAATGACCATATGGGATTTTAAGAAGGATGGGGCCAAGTGGAACAAGATCCATGTGCTGAAGGAACACAATGGACAAGTGACTGGCATCGACTGGGCTCCTGAGAGCAATCGCATTGTGACCTGCGGCACCGACCGCAACGCCTATGTATGGACCCTTAAGGGCGAGGTATGGAAGCCCACCTTGGTCATCCTAAGGATCAACCGGGCTGCCCGCTGTGTCAAGTGGTCCCCCAAGGAAAACAAGTTTGCTGTGGGCAGCGGCTCCCGACTTATTTCTGTCTGCTACTTTGAGCAGGAGAATGACTGGTGGGTTTGCAAACACATCAAGAAGCCGATTCGCTCCACTGTCCTGAGCTTGGATTGGCATCACAACAATGTTCTGCTGGCAGCTGGCTCTTGTGACTTCAAGTGCAGGGTTTTTTCGGCCTACATCAAAGAAGTTGAGGAGAAGCCATCTCCAACTCCCTGGGGCTCCAAGATGCCATTTGGGGAATTGATGTTCGAGTCAAGCGGCAGCTCCGGTTGGGTTCACAGTGTGTGCTTCTCCAGCAGCGGGAGTCGTGTGGCCTGGACCAGCCATGACAGCACTGTGGCTGTGGCAGACGCTGGTAAAAACACTGTTATTTCCAGCCTGAGCTCTGAAACGCTTCCTCTTCTGACTGTTATGTTCATCACCGAGAACAGCTTGGTGGCAGCTGGAAAGGGGACCATTACCTTTGGTGGGAAGCTGGACGTGCCCAAGCAGAGTGCCCAGCGTGGGATGACCGCCAGAGAGCGTTTCCAAAACCTGGACAAGAAGGCCACCACTGAGACGAAGGAGGCCATCCTGGAGACCCTGCACAAAAACAGCATCAGGCAAGCACTCTCACCTTCCTATTCAAATCTCTATTCTGGAAGGGGGCAAGTCCAAATGTGCCAAATTCTGTACCACTGGCATGGATGGAGGACTGGCAATTTGGGATGTAAAGACGCTGGAATCTGCAATGAAAGATCTGAAGATTGTTTAAGTCTCAGGTGTGATCAACCCATTGCAAAAGCAagctaa

Function

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K05757 ARPC1A_B; actin related protein 2/3 complex, subunit 1A/1B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146533 lncRNA upstream 38688 13846890 ~ 13847092 (+) True G116976
TU146532 lncRNA upstream 45809 13839716 ~ 13839971 (+) True G116975
TU146490 lncRNA upstream 194413 13666023 ~ 13691367 (+) True G116941
TU146409 lncRNA upstream 518752 13366640 ~ 13367028 (+) True G116882
TU146286 lncRNA upstream 670428 13129738 ~ 13215352 (+) True G116790
TU146591 lncRNA downstream 117982 14020643 ~ 14022806 (+) False AMCG00018537
TU146732 lncRNA downstream 339456 14242117 ~ 14242717 (+) False AMCG00018551
TU146733 lncRNA downstream 340203 14242864 ~ 14244203 (+) True G117130
TU146734 lncRNA downstream 342047 14244708 ~ 14245318 (+) True G117131
TU146778 lncRNA downstream 428180 14330841 ~ 14399539 (+) True AMCG00018564
AMCG00018530 mRNA upstream 7715 13859895 ~ 13878065 (+) True AMCG00018530
AMCG00018527 mRNA upstream 100231 13782714 ~ 13785549 (+) True AMCG00018527
AMCG00018526 mRNA upstream 236688 13639723 ~ 13649092 (+) True AMCG00018526
AMCG00018523 mRNA upstream 350953 13468893 ~ 13534827 (+) True AMCG00018523
AMCG00018520 mRNA upstream 538903 13321350 ~ 13346877 (+) True AMCG00018520
AMCG00018533 mRNA downstream 38967 13941628 ~ 13960988 (+) True AMCG00018533
AMCG00018536 mRNA downstream 69889 13972550 ~ 13985601 (+) True AMCG00018536
AMCG00018537 mRNA downstream 95248 13997909 ~ 14022066 (+) True AMCG00018537
AMCG00018547 mRNA downstream 209043 14111704 ~ 14111910 (+) True AMCG00018547
AMCG00018538 mRNA downstream 240507 14143168 ~ 14145995 (+) True AMCG00018538
TU146394 other upstream 557508 13307898 ~ 13328272 (+) False AMCG00018520
TU146344 other upstream 629986 13253343 ~ 13255794 (+) True G116832
TU146176 other upstream 1365899 12515803 ~ 12519881 (+) True AMCG00018491
TU146017 other upstream 1915002 11966247 ~ 11970778 (+) True G116585
TU145312 other upstream 4272862 9609077 ~ 9612918 (+) False AMCG00018380
TU146594 other downstream 117267 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 143598 14046259 ~ 14049153 (+) True G117033
TU146633 other downstream 238716 14141377 ~ 14145578 (+) False AMCG00018538
TU146688 other downstream 286342 14189003 ~ 14191077 (+) True AMCG00018553
TU146730 other downstream 336837 14239498 ~ 14242037 (+) False AMCG00018551

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00050469 True 1687 mRNA 0.45 10 NC_007114.7 40796110 ~ 40804455 (+)
grasscarp (Ctenopharyngodon idella) CI01000046_03643306_03647935.mRNA True 2282 mRNA 0.40 8 CI01000046 3642182 ~ 3647935 (-)