RNA id: AMCG00018579


Basic Information

Item Value
RNA id AMCG00018579
length 5344
RNA type mRNA
GC content 0.60
exon number 42
gene id AMCG00018579
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14479080 ~ 14495801 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGTAACACAAGTTGTGTACGAACAGAGGAACAGGCGGAAGCAAAGGCACCAAAACAAGAggcagaataaaacaaacaggaataaaacacaacacacgGCGGAAGTCCTGATGGCCCATGTGTGGCCGTCTGTGCAGCGGTGCGCGGACTCGGGTCGGAGCGGGCGGTGACGTAGCCACGGCTGTGATTGCAGCGCTGGGGGCATCTGCCACTGCCCCAAACAGGGAGGCTGCAGTTGTGGACATTGGCGTGTGCAAGTGCccagggtggtggggggcggTGTCACACTGTTTCTGTTCCCCAGTCCTAGCCGGGCAGCGTCGCCATGAGGACCAACAAGTCCTACAAGCTGGTCATTCACAAGAGGGGCTTCGGGGGCAACGAAGATGAGCTGATGGTGAACTCTAAGGTGTTTCCTCAGGTGCGTCCCGGCGACATTGTGGAGATCGCCCATCCCAACGATGAGTACAGCCCACTGCTGCTGCAGGTGAAGAATCTGAAGGAAGATCTCCAGAAAGAGACTGTAAGTGTGGACCAGACTGTGGCCCAAGCCTTCAAGCTCCGTGCCTACCAGGATGTGTTCGTCAACATTGTCGACCCCAAGGATGTGACCCTGGACCTGGTGGAGCTGACCTTTAAGGACCAGTACATCAGCAGGGGGGACATGTGGCGACTGAAGAAGAGcttggTGAGCTCCTGTGCGTACGTCAGTCAGAAAGTGGAGTTTGCTGGGATCAGGGCTCAGGCCAGTGAGCTGTGGGTCAGGGGGGAGAAGGTGACGTGTGGCTACATCAGCGAGGACACGCGGgtGGTGTTTCGCTCCACCTCTGCAATGGTCTACATCTTTATTCAGATGAGCTGTGAGATGTGGGACTTTGACATCTATGGTGACTTGTACTTTGAGAAGGCAGTGAATGGCTTCCTGAGTGACCTGTTTGCCAAGTGGAAGGAGAAGAACTGCAGCCATGAGGTCACCGTGGTCCTGTTCTCTCGCACCTTCTACCAAGCCAAGAGCATCGatgAGTTTCCTGAGGTCCTTAGAGGCTCTGTGTGTCAGGACCACGAGGGTCGCTTCTATGAGGATTTCTACAGggttGTGGCTCAGAACGAGCGGCGTGAGGAGTGGATGTCCCTGCTGGTCACCATTAAGAAACTGTTTATCCAGTATCCTGTACTGGTGCGTCTGCAGGGGGCAGaTGGGTTCCCCAGCGGACACAACTCCACTGCAGCTCAGGGCAACTATCTGGAGGCCATTAACCTGTCCTTCAATGtgtttGATAAGCACTATATAAACCGGAACTTTGACCGCACCGGTCAGATGTCGGTTGTCATCACTGCGGGGGTGGGTGTGTTCGAGGTGGACCGGCTTCTCATGATCCTGACCAAGCAACGCATGATTGACAATGGTATCGGGGTGGACCTGGTGTGTATGGGGGAGCAACCACTACACGCTGTTCCACTGTTTAAGCTACACAATCGCACAGTGCCAGGAGACTCCAGACTAGGGGATGACTACAATCTCCCCCACTGGATCAATCAcagTTTCTACACCTCTAAGAGTCAGAGCTCGTGTAACTGTTTCACCCCCCGAATCAAACTGGCCGGGCGGAAGTCTCCCTCTGAGAGAGGCAAGAGCAGTAAGGAGCATGCCCTGGGAGCCCCAAAGGACTCTGAGAATAGCCTGCCCATCCAGGTGGACTATGCTGCCCATGATGCCCAGGTGTTCCGTCTGCCAGGACCATCCCGCGCCCAGCGCAGCACCCACTACAGTCGGCCAGTGCGGGACCGGGACCGCGAGCGGGACAGGGAGCGGGAAGTGGGCGGCAGGAAGAGCTCGAGTTCCTGTGACGTGTCAGGAAGCCCCACCCCCAGCCGCGCCCTGGTGCCCCCCCCCGAGGAGCAGCGCAGCCTGGCCTCGGACGACAGCCTGGGCCGCGTCTCCAGCATCCTCCTCATCCCCCGCGGACCCCCCGCACAGTATGAGGTCAGCAGCTCGCTGGGCTACACCAGCACCAGAGagctgCTGGAGAAGATGCTGGAGTCTCAGCGGGACTCCAGCGCACCGGGCAGGTTCCACGTGGGCAGTGCAGAGTCCACCCTGCACGTGCGGCCGGGCGGGTACACACCCCAGCGCGCCCTCATCAACCCCTTCGCCCCCTCCCGCATGCCCATGAAACTCACCTCCAACCGCCGGCGCTGGATGCACACTTTCCCCAtggGCCCGTCAGGGGAAGCAATCCAGATCCACCACCAGACCCGTCAGAACATGGCGGAGCTTCAGGGCAGCGGCCAGCGAGACCCCGCCCACACCTCTGCAGAACTGCTGGAGCTGGCCTATCACGAGGCCACAGGCAGGCGGACTGCAGTCAGACAGCTTGGTGAGAACGGGTTCTATGTGAGTGGCGGCAGTGCAGACGACTTCACCAGCAGCCCGGCCAGCAGCAACAGCACAGggACTCCAGTGAACAGGGGCAGCTCGTTCGAGGACTCCTCCTCCAGCAGCCCGGACCCCACTGTGGTGCTGTCTGCCCCCCCAATAGTGCCAGGGTTCTGTTGCACGGTCGGGGTGGACTGGAAGTCCCTGACCACGCCGGCCTGCCTGCCGCTCACCACCGACTACTTCCCAGAGAGACCCACCCTGCAGAACGACTACACTGAGGGCTGCTACGACCTGCTGCCACACACCGACCtggagaggcGTGAGGAGGACAGCAGTTTGATGTCAGCCCCCCAGGTGTTTGAGGAGTTCATTTGCCAGCGGCTCATGCAGGGGTATCAGCTGATTGTGCAGCCCAGCACCAGGAAGCCCCCCCCGTCTACCGCACCTCCCCTCAGCAGCAGCCCCCTCTACTCCCGAGGGCTGGTGACGCGCAGGAAgatagaggaggaggagagtcaGTACTGGCTCAGCATGGGCCGCACTTTCCACAGAGTCTGCCTGAAGGATCGCATCATCACAGTCACGCGCTACCTGCCCAAGTACCCGTACGAGTGCGCCCAAATCCAGTACAGCTACAGCCTGTGCCCCTCTCACTCGGACGGGCTCTTCCAGTCCTGCTGGGTGGACTTCAGCCACGAGCGCCTGGAGGAGTACAAGTGGAACTACCTGGACCAGTATATCTGCTCTGCCGGGTCCGAGGACTTCagTCTGATCGACTCTCTGAAGTTCTGGCGGACGCGCTTCCTGCTGTTGCCTGCGTGCGTGGGGGCCGTGCGGCGCATGGCGGAGGGGGAGGGGCGCTGCGATGTGTTTGGGGAGCGGCCGCGTGGCGAGGGTGGCGACTGGGCCCTGCTGGACGGCTTCATCCGCTTCACTGAGGGGCTGAACCGCATCCGTCGGCGGCACCGCTCTGACCGCATCACCAGGaagGGACCAGCCATGAAGAACCTGCCAGTGTCAGGGCCTCTGGCTGCCTACCCCCCTGAGCCATCAGCGCCCCCCATGGGCAAGAAGGGCACCTCCGCCCTGTCTGCCCTGCTGGAGATGGACCAGAGGTGTCTGGAGGAGCAGCAGGCAGCTATGCATGTTGGGAAATCTGTAGCACCGCTGAATGACACTGCAACTGTTTCCATGATGCCCACTTTTGTCGACAGCCCCCGAAAGGATGGTGTCTTCTTTCTGGAGTTTGTTCGCAGCCCTCGCTCCTCTTCCATCTTCCACCCCCAGTTGTCCGGGGATCAAACTTCAGCCAGTGCTGTAGAGAGTGGAGCGACTGACAAGGTGGCTGTCCAATCAGGAGAACGGGCCGGAGCCCAGCCGGGGGCCACACTGGTTTCTCAGAATTCTGTGGAGGCGGGGTCAGTGTCGGGGGTCGCTTTGGAGACCAGTGCGGGGACGGGGCCCGGCGGAACAGCTCTTTCTTCCTCCTCCACACTGACAGAGATCCTGGAGGCCCTCAGACACCCAACGACAGGGGTGCAATTATTGCCAGAGCAGAAGGGTCTGCCTCCCAACTGCTTCATCAGTGCGGAGGTTGTTCATTGGCTGGTCAACAATGTGGAGGGCGTGGCCACACAGAGCATGGCCGTCGACATCATGCAGAAGATGCTGGAGGAGCAGCTGATCACGCACGCGTCAGGGGAGGCCTCACGCCCCTTCGTCTATGGCTTCTACTTCTACAGGATCGCAatggacagggacagggacccAGACCGTGCAGGTGGCGGTGGTGTCCAGCAGTCCCAGCAGCAACAGCCCTCTGCGGCCGCCCTCGAGGACTTATCGCTGTTCCAGAGGAAGTGGTTCGAGGTGGCGTTTGCTCCCGAGGAGCGCCCCCCTGCCGACCTGCCCGCCTTCCTGCTGCCCTGGCTGCCCAGCCGCCCCGCTTCCTACGCCAGCCGGCACAGCTCCTTCAGCCGCAGCTTTGGGGGAAGAAGCCAGGCCATAGCACTGCTAGCTGCCACAATGCTGGACCAGAAGACCGTGACCCTGGACGTTGACGTGAATAACCGTAGCAACCGGATGGAATGGTGCAGCTGCTATTACCATGGCAACTTCTCCCTCAGCACCGCCTTTGAACTGAAGCTGCACTGGATGGCTGTGACTGCCGCGGTGCTGTTCGAGATGGTGCAGGGCTGGCACAGGAAGGCGGCGTCCTGCGGGTTCCTGCTGGTGCCCGTGCTGGAGCTGCCCTTCGCGCTGCCCAGTGTGTTGTACGGCGACCCGCTGCGCGCCCAGCTCTTCATCCCCCTGCACACCGCCTGCCTGCTGCGGCCGGGCGCTGACAACATCTTCGAAAGTGAGGCGGGGCACTGGGGGGGCAATGGGacttcGAACCCGAAACCTACTGGGATCGCATGCAGCTCTTCCAGGAGGCCATCCTGTACAGGCACTGTGTTCCTGCAGCTGCCCTACTCCAAGAGGAAGTACCCGGCGACTGGACAACCGAGGCGTCGCCGCAACTCCGCCAGCTCCTCCACTCAGAGCCTGTGCGGGGGCGGAGTCGGGGGAGACGAGCATATGATTGGCTACAACTGGGCCTACAACACCATGCTGACCAAGGCCTGGCGCTCGGCCGCCACGGGGGATGAGAGGCTGGCAGAGAGGCTGCTCAGGGACTTCACCGACTTCTGCACCAACAAGGACGACCGGCTGCTGCGCTTCTGGGAGAGCTGCCAGGAGAGGATGAATGCCAGTGCCCCCTAGAGggacggagggagggagaagatagagagagagagagagagagagagagagaaggaggttAGGTGGAGCCCCACACCTGTCCAGCAATGTGGACAGTCAGACGGACATAGAGTGTCCACTTGACGGGGGTATATGACCTGTACAAGAAGGTTTTTTGTGcataaaaataactgtaaattaataaaaatatttctccaa

Function

GO: NA

KEGG:

id description
K20404 DEPDC5; DEP domain-containing protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146814 lncRNA upstream 39989 14437992 ~ 14439091 (+) True G117197
TU146746 lncRNA upstream 66825 14409131 ~ 14412255 (+) False AMCG00018567
TU146778 lncRNA upstream 79541 14330841 ~ 14399539 (+) True AMCG00018564
TU146734 lncRNA upstream 233762 14244708 ~ 14245318 (+) True G117131
TU146733 lncRNA upstream 234877 14242864 ~ 14244203 (+) True G117130
TU146834 lncRNA downstream 38162 14533963 ~ 14534200 (+) True G117209
TU147042 lncRNA downstream 240295 14736096 ~ 14738327 (+) True G117353
TU147070 lncRNA downstream 278314 14774115 ~ 14775240 (+) False G117379
TU147072 lncRNA downstream 278314 14774115 ~ 14775240 (+) False G117379
TU147073 lncRNA downstream 278314 14774115 ~ 14775240 (+) False G117379
AMCG00018580 mRNA upstream 747 14476918 ~ 14478333 (+) True AMCG00018580
AMCG00018566 mRNA upstream 32999 14445220 ~ 14446081 (+) True AMCG00018566
AMCG00018565 mRNA upstream 47454 14420275 ~ 14431626 (+) True AMCG00018565
AMCG00018567 mRNA upstream 66801 14408958 ~ 14412279 (+) True AMCG00018567
AMCG00018569 mRNA upstream 72102 14404406 ~ 14406978 (+) True AMCG00018569
AMCG00018578 mRNA downstream 2798 14498599 ~ 14504059 (+) True AMCG00018578
AMCG00018576 mRNA downstream 15437 14511238 ~ 14519019 (+) True AMCG00018576
AMCG00018575 mRNA downstream 24051 14519852 ~ 14529437 (+) True AMCG00018575
AMCG00018583 mRNA downstream 46529 14542330 ~ 14547480 (+) True AMCG00018583
AMCG00018582 mRNA downstream 56293 14552094 ~ 14554070 (+) True AMCG00018582
TU146792 other upstream 131339 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 237043 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 288003 14189003 ~ 14191077 (+) True AMCG00018553
TU146633 other upstream 333502 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 429927 14046259 ~ 14049153 (+) True G117033
TU147075 other downstream 279988 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 290822 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 458763 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2572411 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 3485409 17981210 ~ 17982114 (+) False AMCG00018681

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00004983 False 4812 mRNA 0.51 42 NC_007121.7 17171742 ~ 17221725 (-)
grasscarp (Ctenopharyngodon idella) TU483857 False 820 lncRNA 0.46 11 CI01000304 6959488 ~ 6963143 (+)
rainbow trout (Oncorhynchus mykiss) TU483857 True 4455 lncRNA 0.40 2 NC_048569.1 64701909 ~ 64706624 (+)