RNA id: AMCG00018623


Basic Information

Item Value
RNA id AMCG00018623
length 3665
RNA type mRNA
GC content 0.46
exon number 5
gene id AMCG00018623
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15772309 ~ 15777303 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCATTGCAGTTACTGCTCTGTGCTGAGTTTCTGTTTATCAGTAAAATCACGATTCACGTCTTACTGGAATTAATAAAGACGATCAGGGGGTGGCTGAAATGTTCTCCACTCCTGATGtgcttttaattacagaacCCAAGCTAGTCAAAGGTGTAATTAACAAGAGAATGGCAAAGCAGAGGGTGACATGCTGAAGCACTCTAAAGGGCACAATCGCAGCTGTGCTTTGACTAGGGCTACTCTGGTACTTCCCACTGCAGTACATTTAGGGAGTAACAGGAGGAGGAGGTTGTTCCCCAAGAggatattttacaaattaaaaactgaagagTTAAACCAAGAGTTAAATGATTATGACTGACAAGGCACTTTCTGCCTTGTTTAAACTGGACAGTGTTTACTTTGGGAGACAAAGTTCACAGAAAAAACAGCTCCAAAGCTCCAAAGCTTGCGGAGAGGCGCTCACTTCACTGCCTAGGAAGGCACAGAGATTCTCAGGATGTGGTTCTTAACCGTAGTCACTCTGGCATGTCTGCTCGCCTCCCCTTCCCTTGCCGGGGTAAAGGACCTGGGTATTCACTTTAGCCCGAGTGGCACTGTGCAGCCGATTGGCCCCCGGGGGCCGGCTTCTGGAGGGGCCCCAGACATGGAGGCCATTCCACCAGAGTTCCACAAAGAAAACACGGTGACGAACGACCTCCCCTTTGATGGTGGCTTTGAGGAGGAGGACTACATTGACTTCGAGAAGCTGCTGGCAGAGGATGATGACTACAGTGATGCCATTGATGAGATTGACACGCCAGTCCAGGGAGTGATCATCACTGCGCCCACTGACCCGCAAGTGAGGAAAGCCCAGCTGCTGCAGCTCTTCCATGGCCAGACCAGGCTCCAGCGGCTCAGCACAGTCAACGCTGACTTCGGGTTTAAACTCTACCGGGTCCTGAGGAATGCTGCCAACCAGTCTGACAACATCCTGTTCGCTCCTGTGGGCATCTCCATCGCCATGGGCATGATAGACCTGGGCACCAAGCAGCTCACCCATCAGCAGATTTACCAAACGTTGGGCTTTGGTGACTTCGTCAATGTCAGCTCCATGTACGAGGACCTGACTGTACACAAGCTCTTCCGCAAGCTCACCCACCGCCTGTTCAGACGCAATTTCGGCTACACGCTGCGCTCTGTCAACGACCTGTATGTGCAGAAGGAGCGCCCCATCGTGGACTCCTTCAAGTCCAACGTCAAGAACTTCTACTTCGCCGAGCCCCAGTCCGTGGACTTCAGAGACCGAACGTTCCTCAGCAAAGCCAACCAGCGCATTGTGAAGATCACCAAGGGGTTGATCAAAGAAGCGCTCAAAAGTGTCAATCCGGACACGGTGCTGATGCTGCTCAATTACCTGTACTTTAAAGGCACCTGGGAAAACAAGTTCCCCGTGGAGCTGACACACCACCGCAGCTTCCGTGTTAATGAGCGACAGACGGTGCGTGTGCCCATGATGCAGACCAAGGGGAACTTCATGGCCGCTGCCGACCACGAGCTGGAGTGCGATATTCTGCAGCTGCCCTATGTGGGCAACATCAGCATGATGATCGCCTTCCCCAGGAAGCTGTCAGGCATCAGGACCCTGGAGAAAGCGATCTCGCCCACCGTGGTCAATAAGTGGATGAGCAATATGACTAACAGGCACGTGCCGACCCGGGAAGTGGTTTTCCCAAAATTTAAGCTGGAGAAGAACTACGACCTGATTGGATACCTACAGGAGATGGGGGTGACAGAGCTGTTTGAGAAGACAGCCGACTTCAGCGGAATGACATCTGAGAAACTCTCCATTGACCTGTTCAAACACCAGGGTACGATCACGGTGAATGAGGAGGGCACAGAGGCAGCCGCGGTGACCACGGTGGGGTTCATGCCGCTGTCCACTCAGATCCGCTTCATTGTGGACCGacccttcctcttcctcatctACGAGCACCGCACCAGCTGCCTGCTCTTCATGGGGCGTGTGGTCAACCCCCTCAATAACTAACCAACCGCCACTAAAGAATGGGTAGCAGGAGACAAAGCTGCTGCCTGCCTTCTCCTCAGAGAGAAGCAGAAATGTTTGTTGCCTGCTCCTTTTCATTTAGCTGAAGCAATGGGTGaaagaagtatatatatatgtacatgtgtgtatgtatgtatctataactataataatttaaaaatcttaaagaaatgtatacatttaaattaaaatgaaaaaataaatactttatctAGTCATGGATATATTTATCATTTCGGTCTCAGCCGGTTGATAAGCAGTATCttctaacaaataaaataattgtcgTCATTTCCTAATGAGAGTCAGAAGTGCTGAATTCTGTCAGGCCAGGGGAAGCTCCGGTCAATAAAATGGCAGACTCTGTGCCAGTGCAGGCCACACCACAGGAGGCCCTGTTACAGAGCTAATCTTAGGGTGGGACAGAACTTATTTGTTGCATTTCATACCAGGCCGGAGATGAATGAAAGCCCCAGCTTTGCTAATGGATCCAGGATTTCACTTTTAATCCCTGAAAGTGATTTTGCTAAAGATGTTTCGACACACACAGTCTCTTTTCTGTTCCATGCAAGATAGCTTATTACTTAATTTTTGCATCACTAGcctttcttaaatattttttgcaggCATGTTCTATGTACACCAAACTATACAATTAAAGCTTGCATgtcaaatgaaaatgttgtgacCTATATTATTAAATTTAGTGTGGCTATGATCTATTCAAACAGAATGTGGAAAacgctttttttgttttttgggaaaCAGGGTCAATGACAGGACATCTTTGTATCAATAGCACGGCACATCAACATCTTGTTATGCAagctgtgtaaatatttgtctcGAAAGTGAAACATTAACTGAAAAGTGGACTCAAACTGATTAACCCTGTTACCTGAAGCAATTGccttcattaataaaacaatcataaataaaaactagacataacaaaaacaagcatgGCTTGATACAGGTAGCGGACAAGATATTAAAATCGCACGCTAATCAGTCACAAACCGTTTCCCAGGAGTTAAAAGGAAACTGGTGTGCATAGCGAGATTTATTTGAGTACCACAGTACCAGCAAACACTACAACAAACAGTTTCGACAGCAGGGTGAGGAAATATGTAACAGTGCAGCGTCAGTGTTTACTGTAGTGAACTGAATAAACTGTACCTTGTTTTCTAGGAGTATCTGGGAGCTCGGCCGTCTCTGGCCACACAGAGCACAGTGTTCTTTAAAGGGGACAATGCAGCTCAAGGATGGCACTGATAGTTTCTAACTCATTTACAGTACCCCCCCTTGTCACTTCCCAATGTTTTCAGAGAGCACTGAATAAGCACCACCCGAGATCAAGAGAAATATATTTAGTCGGTTCTTACCACAGCAATTACTGGAATGAGCACCCCCAGATTGCCAGCACTGCTGGACGCCTGCAGagaaaacataataacattaatCTTCATTGTCTTAAAGTCACGTTACATCTCATTCTTTCTGTATACAGCTTCAAAATCTCATCTTGTGTgtcacctttttattttttaaattgccattaaaaataaaataaaaaattaaaacaatttgtaataAAGGTTGGCTGTAAATGTGAG

Function

GO:

id name namespace
GO:0005615 extracellular space cellular_component

KEGG:

id description
K03912 SERPIND1, HCF2; heparin cofactor II

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147317 lncRNA upstream 73444 15695426 ~ 15698865 (+) True G117573
TU147318 lncRNA upstream 77056 15693213 ~ 15695253 (+) True G117574
TU147297 lncRNA upstream 144590 15627339 ~ 15627719 (+) True G117557
TU147253 lncRNA upstream 242968 15525714 ~ 15529341 (+) False G117521
TU147252 lncRNA upstream 242997 15492246 ~ 15529312 (+) True G117521
TU147415 lncRNA downstream 306050 16083353 ~ 16121445 (+) True G117660
TU147567 lncRNA downstream 971566 16748869 ~ 16749971 (+) True G117768
TU147592 lncRNA downstream 1231595 17008898 ~ 17009246 (+) True G117783
TU147612 lncRNA downstream 1376479 17153782 ~ 17155824 (+) True G117801
TU147618 lncRNA downstream 1383459 17160762 ~ 17161040 (+) True G117804
AMCG00018624 mRNA upstream 80568 15682455 ~ 15691741 (+) True AMCG00018624
AMCG00018620 mRNA upstream 102640 15668815 ~ 15669669 (+) True AMCG00018620
AMCG00018618 mRNA upstream 124134 15637974 ~ 15648175 (+) True AMCG00018618
AMCG00018619 mRNA upstream 187222 15583593 ~ 15585087 (+) True AMCG00018619
AMCG00018611 mRNA upstream 303927 15430284 ~ 15468382 (+) True AMCG00018611
AMCG00018625 mRNA downstream 8590 15785893 ~ 15790897 (+) True AMCG00018625
AMCG00018630 mRNA downstream 234984 16012287 ~ 16025098 (+) True AMCG00018630
AMCG00018635 mRNA downstream 478894 16256197 ~ 16278801 (+) True AMCG00018635
AMCG00018637 mRNA downstream 503530 16280833 ~ 16286663 (+) True AMCG00018637
AMCG00018638 mRNA downstream 518735 16296038 ~ 16298711 (+) True AMCG00018638
TU147178 other upstream 815729 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 984176 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 995815 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 1424568 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 1530272 14239498 ~ 14242037 (+) False AMCG00018551
TU147595 other downstream 1290909 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 2203907 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 2203907 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 2941903 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 3671323 19448626 ~ 19450628 (+) False AMCG00018740

Expression Profile