RNA id: AMCG00018624


Basic Information

Item Value
RNA id AMCG00018624
length 1551
RNA type mRNA
GC content 0.56
exon number 3
gene id AMCG00018624
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15682455 ~ 15691741 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggtgGTGGTGTGGGGGGTGGTACAGGGGTGTGAAGAGAAGGTGGAAATGGAACTGCCAAATCATGCCAAACAATTGCTGCTGCAGCTGAATCAACAAAGAGCCAAAGGGTTTCTCTGTGACGTTATCATCGTGGTAGAAAATGCACTCTTTAGGGCGCACAAGAACATTTTGGCGGCCAGCAGCATATACTTTAAGTCCCTGGTCCTTCACGACAACTTGATCAATCTGGACACTGACATGGTCAACCCGTCAGTGTTCCGGCAGATCTTGGACTTTATTTACACTGGCAAGCTTCTATCGACGGATCAAACCAGCGATCAGAATTTCAACGCCCTCCTGACAGCAGCAAGCTACCTCCAGCTCCACGACCTGGCCGCCCTCTGTAGAAAGAAGCTCAAGCGCAACGGAAAACCTCTGCCCAGCAAGCCTACTACCCCCAACGCAGGGAGGCCTCTTCGGAACCAGAGGCTGTCCTCCACGCCGGTCATTCAGAATCGCTATTCAGGGTCAAAGGATGGTGTGAAGAAGCAGATCGAAGAGCTGCCCAAGGACAAGCTCGCAGACGTCGAGATCTTTATCAGCAATTCCAACGCTGAAGGCTCCAACTCCTTGAACAGGGTGACAAACAACAACACCGGGAGCAACGGGAATGTCAGCAGCTCCGGCGATCAGGAGCTGGGCCTCGACCTGTCCAAAAAGAGCCCCTCTTTGTGCACGACCCAAGAGGAGGTCAGTCCAAGCAGCATCCAACAGGAATCCCCTCAATCTGCCTCAGTATCCACAGCCAACAGTGCCTCTTTTGAAGACTCCATCACAAACCCTCAAAGCCTGGACAGTGGGGAGCCCATGGATTTGGGCGGGGGGGGCTGTGAGGAGAGCAAGTCCCTCCCTGACACGGGACAGCAGTGCAAGAGCACGCGCCACTCTGGTCGCAAGAAAGAGTGGCCTAAAAAAGAGAACATAGCCTTGGAGAGCACCAAAGCTGACGATGACAAGCCCATGCCCAACGGCGTCATCGTGGGGCCCAAGGGTGCAGACCACAAATCCAGCACTGGCAGtggctgcagcagcagcagcgtggGCTACAACTCGGAGCACTCCTTCCAGTGCAAAGAGGAGGATGTGGAGAACGGCAAGGATAACAGCGAGGAGAGCGGCCACAGCGAGAACGAGAGCGGCCACACGAGCGCCAACTACGTCTACCGGCAAGAGGGCTTTGAGCCGGTGGCCTACGGGGACAACCTGTACGTGTGCATCCCCTGCGGGAAAGGCTTCCCTAGCTCGGAGCAGCTGAACGCCCACGTGGAGACGCACACAGAGGAGGAGCTGTATATCAAGGAAGAGGATTCCTACATCAAGGAAGAAGCGGAAGACCTGTCCACCCAGAATGCATCGTTCGGCACCGAGGCACGACCCTTCAAGTGCTCGGTGTGCGAGAAGAGCTACAAGGATCCCGCCACCCTGCGGCAGCATGAGAAGACCCACTGGCTCACCCGGCCCTTCCCCTGCAACATTTGCGGCAAGATaGCATATGGAGGCTCtctgtga

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147297 lncRNA upstream 54736 15627339 ~ 15627719 (+) True G117557
TU147253 lncRNA upstream 153114 15525714 ~ 15529341 (+) False G117521
TU147252 lncRNA upstream 153143 15492246 ~ 15529312 (+) True G117521
TU147080 lncRNA upstream 782537 14855079 ~ 14899918 (+) True G117380
TU147090 lncRNA upstream 885305 14796531 ~ 14797150 (+) True G117389
TU147318 lncRNA downstream 1472 15693213 ~ 15695253 (+) True G117574
TU147317 lncRNA downstream 3685 15695426 ~ 15698865 (+) True G117573
TU147415 lncRNA downstream 391612 16083353 ~ 16121445 (+) True G117660
TU147567 lncRNA downstream 1057128 16748869 ~ 16749971 (+) True G117768
TU147592 lncRNA downstream 1317157 17008898 ~ 17009246 (+) True G117783
AMCG00018620 mRNA upstream 12786 15668815 ~ 15669669 (+) True AMCG00018620
AMCG00018618 mRNA upstream 34280 15637974 ~ 15648175 (+) True AMCG00018618
AMCG00018619 mRNA upstream 97368 15583593 ~ 15585087 (+) True AMCG00018619
AMCG00018611 mRNA upstream 214073 15430284 ~ 15468382 (+) True AMCG00018611
AMCG00018602 mRNA upstream 700750 14954674 ~ 14981705 (+) True AMCG00018602
AMCG00018623 mRNA downstream 80568 15772309 ~ 15777303 (+) True AMCG00018623
AMCG00018625 mRNA downstream 94152 15785893 ~ 15790897 (+) True AMCG00018625
AMCG00018630 mRNA downstream 320546 16012287 ~ 16025098 (+) True AMCG00018630
AMCG00018635 mRNA downstream 564456 16256197 ~ 16278801 (+) True AMCG00018635
AMCG00018637 mRNA downstream 589092 16280833 ~ 16286663 (+) True AMCG00018637
TU147178 other upstream 725875 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 894322 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 905961 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 1334714 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 1440418 14239498 ~ 14242037 (+) False AMCG00018551
TU147595 other downstream 1376471 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 2289469 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 2289469 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 3027465 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 3756885 19448626 ~ 19450628 (+) False AMCG00018740

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00003643 True 1696 mRNA 0.51 1 NC_007121.7 3153973 ~ 3155668 (+)
grasscarp (Ctenopharyngodon idella) CI01000178_01005914_01007599.mRNA True 2063 mRNA 0.49 1 CI01000178 1005698 ~ 1007760 (+)