RNA id: AMCG00018625


Basic Information

Item Value
RNA id AMCG00018625
length 1817
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00018625
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15785893 ~ 15790897 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCGCTCTTTCCTCAGCAGCGCCAGCTCTGCGGTCACATGACTGCAGGAAGTGAGCGTATGACGTCACCAAACTGTTCCGGGGGAAGGTCAGCTGACACAACAGCCAGCGCTGTGGCGGAAGTGCAACAGAGGGAGGGGAGCCTTTCGTGGTCTGTAAGGATGTCCGCCTACCCGAAGAGCCATAACCCTTTTGCCGATGAAGATGAGGAGGAAGGGAGTTCtgggtggggagggggtttGGACGAGTCCAAGGAGAGCCGGGTGAGCGAGGCCGAGCGGCGGCAGATGCAGCTGGAACAGGAGGTGAGGCGCACGGCCCAGTCCGCCGTGGACAGCAGCTACCGCTCCCTGAGCCTCATCTACGAGTCGGAGAAGATTGGCACCGAGACCGCAGAGGAACTGGTGAGGCAAGGTGAGGCACTGAAGAGGACTGAGAGGATGGTCGACAATATGGACCAAGACCTAAAGACCAGCCAGAGACACATCAACAGCATCAAGAGTGTGTTTGGGGGCTTCATGAATTACTTCAAAGCCAAACCGGAGACCAAGCCCCCACCAGACCAGCCAGCACAGTACAAACCCAGCACCAAATTGGAAAACGCATTAGAAGAAAGTAAGATGCAAGAACAGAACTATCAAGCCAGCCACCCAAACCTCAGAAAACTGGAAACGTCAGGATTTGGAGCTTCTGGATCAGAGTTCCCCTCCTCCCACAGTAACATGACATATTCCAAGAACAAGCACCTACAAACAGCTCATGAGCAGCTGGACAACAACCTAGATGACATGTCTCTCGGCTTGGCTCGACTGAAGAACctggggctggggctgcagTCTGAAATAGACGAACAGGACGTCTCTCTGGAAAACCTGCTGGGCAAAGTGGACAAGATGGACCACAGGATCAATGAAACCAACCAGCAGCTcaaaaaactttaataaattTCAGACAACAAGAGCTCTGCTGCATTTTATACTTGTACACACTATTGGATtctattgtcattttttttaaagtctttatTCCCCACCCCCAagcaaaaatattgtattcttaGTTTAGAACTGAAAAGTACTCCATCAGTTATGATTTGATTAATGcagatattcaaaatatttcaaattgaatggTCCAGAACATTTGGAAAACTGAATACAGTACAggtttatttcataattttaaagcCGCAAAATTATTCTTCTTTAGCTAAAACATACTGCCACAAGTAGTGGTTTTCAGTTCTGGTCAAGAAACTCATTGCACGTTGTAGAAAACAATGACTTAATACCTCCTTTATTtgttctctctcacactctaTATTCACATGTTACGGTCTATTATTTAAAGTTACATTGTAGCAGGAAGGTTATTGAACTTAATGCCAAGTGAATCTCTTACCACTAATATGACAATACTACACTAGATCACAGTACAATCCTCCTGGGACAAGCACTATGATTGAGGACATTCATTAAGCATCAATGAAGCCAAATTTTACAGTATCTGGTGCACAGAAGATGGTGAGGATGAACTAGCAGTAAGCCAAATAGTGAGCATGGTAATTGCATAATTAGAAATATATGTGATGTTTTGCCTGAAGTGCATTAATGGTTTGATGGTGAATCTAACATGTACAAAACAAGCTGCCTTGGGAtgaatttcacatttgtatAGATATTCTTAAAACTGATTTCGGTCTCTTGCCTTTCAGCGTTCTCTGTTTTTGAATATTAGGTAGAAGccttagtattgttattatttgttttgctgtgtaagaaaaatatttgtattaaaaccaaaataatgtaaaatggg

Function

GO:

id name namespace
GO:0048730 epidermis morphogenesis biological_process

KEGG:

id description
K08509 SNAP29; synaptosomal-associated protein 29

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147317 lncRNA upstream 87028 15695426 ~ 15698865 (+) True G117573
TU147318 lncRNA upstream 90640 15693213 ~ 15695253 (+) True G117574
TU147297 lncRNA upstream 158174 15627339 ~ 15627719 (+) True G117557
TU147253 lncRNA upstream 256552 15525714 ~ 15529341 (+) False G117521
TU147252 lncRNA upstream 256581 15492246 ~ 15529312 (+) True G117521
TU147415 lncRNA downstream 292456 16083353 ~ 16121445 (+) True G117660
TU147567 lncRNA downstream 957972 16748869 ~ 16749971 (+) True G117768
TU147592 lncRNA downstream 1218001 17008898 ~ 17009246 (+) True G117783
TU147612 lncRNA downstream 1362885 17153782 ~ 17155824 (+) True G117801
TU147618 lncRNA downstream 1369865 17160762 ~ 17161040 (+) True G117804
AMCG00018623 mRNA upstream 8590 15772309 ~ 15777303 (+) True AMCG00018623
AMCG00018624 mRNA upstream 94152 15682455 ~ 15691741 (+) True AMCG00018624
AMCG00018620 mRNA upstream 116224 15668815 ~ 15669669 (+) True AMCG00018620
AMCG00018618 mRNA upstream 137718 15637974 ~ 15648175 (+) True AMCG00018618
AMCG00018619 mRNA upstream 200806 15583593 ~ 15585087 (+) True AMCG00018619
AMCG00018630 mRNA downstream 221390 16012287 ~ 16025098 (+) True AMCG00018630
AMCG00018635 mRNA downstream 465300 16256197 ~ 16278801 (+) True AMCG00018635
AMCG00018637 mRNA downstream 489936 16280833 ~ 16286663 (+) True AMCG00018637
AMCG00018638 mRNA downstream 505141 16296038 ~ 16298711 (+) True AMCG00018638
AMCG00018636 mRNA downstream 582999 16373896 ~ 16378701 (+) True AMCG00018636
TU147178 other upstream 829313 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 997760 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 1009399 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 1438152 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 1543856 14239498 ~ 14242037 (+) False AMCG00018551
TU147595 other downstream 1277315 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 2190313 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 2190313 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 2928309 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 3657729 19448626 ~ 19450628 (+) False AMCG00018740

Expression Profile