RNA id: AMCG00018630


Basic Information

Item Value
RNA id AMCG00018630
length 3439
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00018630
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16012287 ~ 16025098 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcaaaatgtatagataaTGTGAAATAAGTGGATAAAAACAGACCAGACGCGGCGTGCAGACTGCTCCGTTTAAACAGGCACTGAGTTAATATACACGGCGAGTCCGAGCACCCTCGTACAATAGAGTGTATTTCTTCATGTACGATAGGTGTTTGTTGATCTTGTGCAGGGGCACTGACCATCCCTATTGTCCAAGAAGGTCTTTGTGGGCGATGCCCTTTAACTGAAAGTAAATGGGTGCCGGGATACCCATTAAAAGGGGCGCActtctctgtctgtcagtcagctTCGTCCCAAGGCGAGGAAAGGCATATTACCTGCAGTTCCTTATCTAAATAGAAATAAGAACCGGTTTTATCGCGAAGGGGAGGCCCTATGCAAAGATAAGAGAGAAGTCTGGATTGCAGTGGCGCATAGAGCAGTAGCGCAGCGCACAGACCGCTTGGAATAACTTGGACAGACAATCTCAGACAAGCAAGGCAGCGCATTTGTATATGGAAGTCGAGAAAGCAGACTCGTTTTGCtctatattttgtatcattacATTTATAGACAGATACAGATAAAAAGGCGATTTTAAGGAACTGAGCATTTGAcctacttttgtattttcttctttggATGTAATTTCAAAGTTTCGTTGACAAAGAAACAACCCCGTACAGGCTGTATGTGgtatttaaaaacttaaaacctACAGAGGACATACAACCACGGAGATGAATGGAAAGAACTGTTAGGCTTACAAAAGGGAATATTTTTGATCGGTTTGTGTCGTGCATAATTATTTTGGGGGcttatttgtgatttaaaacaaaaaataaactttttccccccctcttcttttttttcttttactaatAAGAGCGTATCGAAAAAGAAGGAACAGTAAGCCCGGTTTTGGGAATGATTTCAGCCATTTCCAGTCCGTGGCTGACTCAGCTGTCCCATTTTTGCGATGTTGCAGCCTTCACCACCAGCAGCCTGAGCAGCCTGAATGCGCCCGGGAGTTACCACCTCTCGCCGTCCCCTGGGGACCCGTACAGTCAGCATGAGCCCCATTACGAGCCCTGCTCCGCCGCCCAGCACAGCTACAGCTACCCGGGCTCCAACCCGGGCCAGGCCCAGCAGAGCGACACCGGGACCTCCAGCTGCTCCTCGTCGTCCTCAAACTCCACTCCCAACAGCAAGCCCCCCGTAAAGAAGAACCCCAAAGTGGCCAACATTAACGTGCAATTGGAGATGAAGGCACTGTGGGATGAATTTAACCAACTTGGGACTGAGATGATCGTAACCAAGGCTGGCAGgAGGATGTTTCCTACATTTCAAGTCAAAATTTTTGGGATGGACCCTATGGCCGACTATATGCTTTTAATGGATTTCTTACCAGTAGATGATAAACGATACCGGTATGCCTTCCACAGCTCATCGTGGCTGGTGGCCGGCAAGGCGGACCCCGCCACTCCCGGGAGGGTTCACTACCACCCGGACTCTCCAGCCAAGGGCGCCCAGTGGATGAAGCAAATCGTCTCCTTTGACAAACTCAAACTGACAAATAATCTACTGGATGACAACGGACATATCATCCTGAACTCCATGCACAGATATCAGCCCCGGTTTCATGTGGTCTATGTGGATCCCAGGAAGGACAGTGAGAAATACGCTGAAGAAAACTACAAGACCTTTGTCTTCGAGGAGACGCGCTTTACGGCGGTCACTGCCTATCAGAACCACAGGaTCACGCAGTTAAAAATCGCCAGTAATCCCTTCGCCAAAGGCTTCAGGGACTGCGATCCGGAAGACTGGCCGAGAAATCACCGGCCAGGATCCCTGCCAATCATGAGTGCCTTCGCCAGGACCAGGAACCCCATGTCATCCCCCCCACAGCAGAACGGCACCGAGAAAGAAGTAGACAGCCGGCGAGAGTATGACCGCGACCCCAGCAGCACCCCCATCCACGGCGACCCCGCCCACCAGCTGATGTCACGCGTCCTGAGCCCGGCACTCCCTGTCCCAGGCGGGCTGCACCCTGTCCCCCTGACCACGGGACGCCCCAGCCCCCCCCACGAACTGCGGCTTGATGGGCACCCCCAAGCCCCCGACAccctccaccaccacccctACAAGTACCCCAGCACCTACGAACACTACCTGGGAGCCAAGACCAGGCCGTCTCCCTACCCACTGCCCAGTATCCGGGGGCACGGCTACCACCACCATATGAACCCCGCTGCTGCCAACATGTACTCTGCTGCCGGAGCCCCTGCAAATTACGACTACGGCCCTAGATAACAGCTTTGTTTtaagtaatgtatatatatataaaactatatatgtaCACAGAAATGGTTGAAGTGCACGGCAACGTGAGACAAGGAAATCAAAACACTATTTTCGCGTGCATTGCTAAATTAAAGTGTTATAACTTCTGGGAATAACACTCCTGTGAATGGATCTGCTTGGAAGCCTCCGATATTTATTAAGGAAGGGTGGTTTAACAAGAAGCGGGGCGTCCTTCACGGCCAGTACAGGAGGATGCAGGTGGATCACACAAGCTCCCCCTGAAGACTGCCCAGCAGCTCCTTTGAACTGTGATACCAAGAGCACTCTTGAGCAAGACTTCTGCACCCATGGGTGTGGTGTGAGCTGTGAACGAGCTTACAGAGAACACAAGAAGACTCTCTGATGAGAAAAAGGATGATAGATAACCACAGACTGgaatttcattttgtgttggatgcacttttttttgctttaaaaacaagccATATGTTATACTTTTGAACCCATCAAGCTTTTAGATTGACGAGAGATCTGTGAGCTCAGCTCTTTGAAGATAACTTGGTTGTCTTCGCTATTTGTTTCGGAGAGCAAAACCGACAAGATTGTTTTGACACTTTGGAACGTCATGAGTAATACAGAGGAGCACTCGTCACATGGCACTGACCTGCAAaagattacttaaaataaaaaaataaaaacaatagataCAAAGATTTCTGTGctgtaactgtaaaaaaataattaaatattttactgtaaaccCTTACAAATCTTTATTTATCTTCTCTTTAAAGCATGCCATTTGAATTGAAAGAAAGTAAGGGATTCAATCCCATcggttatgtttttaaatgtcttaacaATAGATTTAACTTCTTTTAATAGGGGTTAAAGCATATATTACATGCACAATAATGTGAGGAAAAGGAGCTGTGTCTGATCTGAAGCCTATGTCATGACACCTGaggttaaatattttttcacatcttcGTTTCTATGCCAAGGATCACACCTGGTGATATACTATTATTCAGTTCCATTGCCTACAGGATGTACTCACTGCTCATTGACCACAACATTTGGCAAACTCTTTTTCCAAGACTAGACATTTgagagcacagacacagactcgtattatatatatatatatatatat

Function

GO: NA

KEGG:

id description
K10181 TBX10, TBX7; T-box protein 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147317 lncRNA upstream 313422 15695426 ~ 15698865 (+) True G117573
TU147318 lncRNA upstream 317034 15693213 ~ 15695253 (+) True G117574
TU147297 lncRNA upstream 384568 15627339 ~ 15627719 (+) True G117557
TU147253 lncRNA upstream 482946 15525714 ~ 15529341 (+) False G117521
TU147252 lncRNA upstream 482975 15492246 ~ 15529312 (+) True G117521
TU147415 lncRNA downstream 58255 16083353 ~ 16121445 (+) True G117660
TU147567 lncRNA downstream 723771 16748869 ~ 16749971 (+) True G117768
TU147592 lncRNA downstream 983800 17008898 ~ 17009246 (+) True G117783
TU147612 lncRNA downstream 1128684 17153782 ~ 17155824 (+) True G117801
TU147618 lncRNA downstream 1135664 17160762 ~ 17161040 (+) True G117804
AMCG00018625 mRNA upstream 221390 15785893 ~ 15790897 (+) True AMCG00018625
AMCG00018623 mRNA upstream 234984 15772309 ~ 15777303 (+) True AMCG00018623
AMCG00018624 mRNA upstream 320546 15682455 ~ 15691741 (+) True AMCG00018624
AMCG00018620 mRNA upstream 342618 15668815 ~ 15669669 (+) True AMCG00018620
AMCG00018618 mRNA upstream 364112 15637974 ~ 15648175 (+) True AMCG00018618
AMCG00018635 mRNA downstream 231099 16256197 ~ 16278801 (+) True AMCG00018635
AMCG00018637 mRNA downstream 255735 16280833 ~ 16286663 (+) True AMCG00018637
AMCG00018638 mRNA downstream 270940 16296038 ~ 16298711 (+) True AMCG00018638
AMCG00018636 mRNA downstream 348798 16373896 ~ 16378701 (+) True AMCG00018636
AMCG00018641 mRNA downstream 393941 16419039 ~ 16434303 (+) True AMCG00018641
TU147178 other upstream 1055707 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 1224154 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 1235793 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 1664546 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 1770250 14239498 ~ 14242037 (+) False AMCG00018551
TU147595 other downstream 1043114 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 1956112 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 1956112 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 2694108 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 3423528 19448626 ~ 19450628 (+) False AMCG00018740

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00058639 True 2343 mRNA 0.46 7 NC_007116.7 15203421 ~ 15215483 (+)
grasscarp (Ctenopharyngodon idella) CI01000071_03446097_03455442.mRNA True 2079 mRNA 0.49 8 CI01000071 3445514 ~ 3455442 (-)