RNA id: AMCG00018636


Basic Information

Item Value
RNA id AMCG00018636
length 2076
RNA type mRNA
GC content 0.49
exon number 6
gene id AMCG00018636
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 16373896 ~ 16378701 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCACACGTACTGACAACCTTTTATTTATGAAGACGTCGCTCaactttgttttcagtttcgATAGGGATCGAGGGGTGTAGAGGTTTTATTTTGCGGCACGACTCTTCCCTTGCACATCCCTGATCGGCCCTGGCTTTCACTGGAACAGCTCCTTTCCAATCCATGAAAACGATCAATTAATTGCGCTACAGCTGGCTCGGTGCGCCGTCGATCATATTTTCCCAGCCTCGATTGCAACCACAGTTGCCGTCTCTTACGCCTGCCCTGGTTCATTGTCAGCATGGCGTTCAGGAAGGCTCTCCGGCTGGTGTGTGGGGTCGCCGGCGGGTCGGCGGTGCTGCTGGCGGCGGTAGCGGCCGCGGAGTCCAGGGGAGCCTCTCCGGATTCAAGGTGCACTGATCGGCTGAGGAACTGGACGGGCTTGGCTGTCCTGCAGGCGGCACAGACCTGGACGTCCGGCACCAGCCATACCGTGTCACCCAGTGGGAACGGTTGGGACGATAACTGGGATAAACGTGAACCCCTTGCCCTCCTCAACGGGAAGAAGAAAGACAAGGAGGCGGGGGATGGGCAGCTGGCCGCAGAGTTGGAGAATAACAAACCCAAGGCCACCAGGCACGTCTTCCTGATCCGGCACTCGCAGTACAACCTGAACGGCCACGGAGACAAGGAGAGGATACTCACTCCGTTAGGTCGGGAGCAGGCGGAGCTGACCGGTCAGCGGTTGGCTGATCTCGGGCTGAAGTACAATGTCCTGATCCACTCCAGTATGACAAGAGCCACAGAGACTGCAAACATCATCAGCAAATACCTGCCAGAGGTTGACATGGTCAGCTGTGATTTGCTGAGAGAAGGAGCTCCGATTGAACCGGTCCCCCCTGTCAGTCACTGGAAACCGGAGGCTGTGCAGTATCATGAAGACGGGGCTCGCATAGAAGCTGCGTTCCGCCGCTACATCCACCGGGCCGACGTCAAGCAGAAGGAGGACAGCTATGAGATCATCGTCTGTCACGCCAACGTCATCCGCTACTTTGTCTGCAGGGCTCTACAGTTTCCCCCAGAGGGTTGGCTGAGGATGGGGCTGAATAATGGCAGCATCACCTGGCTGACCATTCGCCCGAACGGGAGAGTCGCCCTGAGGACTCTAGGGGACTCGGGCTTCATGCCTCCGGAGAAACTGACTCGCTCCTGACACCACCACGGACTCCCGCAGCGCTTCCTGGCTCATTCCTGCTCTCCATTCTCTGAATAGAAAGCTTGAGTTTGAGTGTAGTGTCTTCTGATTAATTCTCCTAAAGTGtcttggatttttgtttttttgttttttttaatctgctgaGCAAAACCTTTTTATGTTCTAACGATTCTGCAAAGTGATCAAATCTGAACTTTAATGTCACGTTTACAAAGGAACAGGAGATACCACTGTCcgtttttactttaatttttctacaaaaaaaggaaaaaacgaaGGAAAAGATGTCTGGAAAACAcgagggagggaaaaaaagaaatgttttgtacacttCTAATAACAACAGGGTTTTTGGAGCACATTACAAAACTGCTTCACAGTTGGACTGACGAGGGCAACTTCATGTGAGTGTTGGAATTGGTGAAATAATGCTggaaaactgatttttaaacAAACCTTATGCATATGATATGCCCCACAGTAGTTAAAATGCCAATTTAACCCTTTTCTAAGTTACAGTAAAAGGAGCACAGTGTGTAAATTATGTAGTTAGAtggttatttataaatgcatcatGTCCTCTTTTAATatgcagtatacagtatatatgtgtgcatttttCAGACTGGTTATCCGCTCAATAAAATTTGAACTGTGTTTCCTCCCTGAGTCTATTGTAGTTTTGTCAGCTGCTCTTATTCATGAGAAGTACTTTACTGTGTTCTGTATTTCTCTATTTTGGTCAGAAGGATGTGGTTGGGTTGTGTAGCATGTTCAACAGACATCTCATGACAGCAGCAGAGAATTGAATTCCTGAAATAAGGAACTCAAATGGGAACTCCAATTTGTATGTTATGGAGAAAGGGCAAGACAAAACCAC

Function

GO: NA

KEGG:

id description
K15637 PGAM5; serine/threonine-protein phosphatase PGAM5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147415 lncRNA upstream 252451 16083353 ~ 16121445 (+) True G117660
TU147317 lncRNA upstream 675031 15695426 ~ 15698865 (+) True G117573
TU147318 lncRNA upstream 678643 15693213 ~ 15695253 (+) True G117574
TU147297 lncRNA upstream 746177 15627339 ~ 15627719 (+) True G117557
TU147253 lncRNA upstream 844555 15525714 ~ 15529341 (+) False G117521
TU147567 lncRNA downstream 370168 16748869 ~ 16749971 (+) True G117768
TU147592 lncRNA downstream 630197 17008898 ~ 17009246 (+) True G117783
TU147612 lncRNA downstream 775081 17153782 ~ 17155824 (+) True G117801
TU147618 lncRNA downstream 782061 17160762 ~ 17161040 (+) True G117804
TU147619 lncRNA downstream 782813 17161514 ~ 17161723 (+) True G117805
AMCG00018638 mRNA upstream 75185 16296038 ~ 16298711 (+) True AMCG00018638
AMCG00018637 mRNA upstream 87233 16280833 ~ 16286663 (+) True AMCG00018637
AMCG00018635 mRNA upstream 95095 16256197 ~ 16278801 (+) True AMCG00018635
AMCG00018630 mRNA upstream 348798 16012287 ~ 16025098 (+) True AMCG00018630
AMCG00018625 mRNA upstream 582999 15785893 ~ 15790897 (+) True AMCG00018625
AMCG00018641 mRNA downstream 40338 16419039 ~ 16434303 (+) True AMCG00018641
AMCG00018648 mRNA downstream 692653 17071354 ~ 17090022 (+) True AMCG00018648
AMCG00018647 mRNA downstream 762688 17141389 ~ 17149356 (+) True AMCG00018647
AMCG00018654 mRNA downstream 874454 17253155 ~ 17256857 (+) True AMCG00018654
AMCG00018655 mRNA downstream 912001 17290702 ~ 17296987 (+) True AMCG00018655
TU147178 other upstream 1417316 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 1585763 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 1597402 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 2026155 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 2131859 14239498 ~ 14242037 (+) False AMCG00018551
TU147595 other downstream 689511 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 1602509 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 1602509 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 2340505 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 3069925 19448626 ~ 19450628 (+) False AMCG00018740

Expression Profile