RNA id: AMCG00018668


Basic Information

Item Value
RNA id AMCG00018668
length 2744
RNA type mRNA
GC content 0.54
exon number 11
gene id AMCG00018668
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17807007 ~ 17823600 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAACACTCGTTTCCCGCCGGTGTTGCGCAGTCGGACTGTTGTTGTTGCGGGACGGTCGCTGACAGAGCCGCGGACCCAGCTGTGTCTTGCGCTCACCATGTCCACTTTTGTGGACACATAGACATGCTGTTGTCCTCGGTCAAGTGAAATGGCAGACGATGATCTCCAGACGTTTAGAGAGCGATGGCAGCAAGAGCTGGGCCAGAATAAGACGAGGCGTGAACACGATGGAGGCGCCGGGGATGAAGCTGGGAAATGTCCACACGGGTCACCGGCTTCTACGGGAAGGACGACCAGTGGGTCTGTGGtcagagaggacagagacacTGTCATCCCCCACCACGAAGAGCAGGGGACAGGTAACCGTGAGGCGCAGGGGACATCTCAGGCCTGGAGAGATATAGACAACCAGGACGCGGGGAAGGGTTTTCACGACAGTGTGTCCACACCTGTGTGTGCCGGAAAGCAAAGCCCTGGGACAAGTAACTCAGACACATGGGTGCCCCAAACACTGAAGCAAATACCCCCTCATCTCCGCCTGAAACGCACTGCAGTCAGGGGCCACTGCCGGGCCGCCCGCCGGAGTACGTGTCCATCGCGCAGGGGCTGCTGGACGGGAGGACCAGTCCTCTGCTGGGCAGGATGCAGGTGGAGAGGACGCGGAGGAAGAGACAGCTGGACAGTGCTGCAAAGACACAGCCCAGGTCTGATCAGCAGGCGCCACTGCACAAAGTCAATCGGAAAGGCACATTACTGGACCAATTAATACAGGACttgAATGAAATCAATGACATCCCTTTCTTTGACGTGGAGCTGCCCTATGAGCTGGCATTGCAGATATTCCAGTACCTCAGCAGGACAGACCTCGGACACTGTGCTCAGGTGAGCAGGACGTGGAAAGTCCTTGCTGAAGATGAGGTTTTGTGGTACAGACTGTGCCTAAGAGAGGGTTACCTCACCGGGGCAAGCGTCTCTGATTCCCCCTGCTGGAAGGGCACTTTGCGAGATTGCAGGAAGATGGAAGATACGCTGAGATACAACTGGAAGAACCGTGTTGGTGCCATCAGCCACTTGCAGTATGAGCTGGGCAAGGTGCTTTGTGATGTCAGCTCTTGTGATGGCCTTGTTATAGCTGGGTACACTTCAGGTGATGTCAGACTCTGGGACACTTTGAACTGGGACGCCGCGGCCACCTACTTGCAGCCCAGTCACGTCAGTATGGGAACAGCACTGAGACCACACATTAGCCACGTCCGACTGAATGAAACGGTGGCGGTGGCGGCCTATGAGGATGGCATGGTGGATGTGTGGAGCACGGAGGCTGGGCAGCAGCCCATACACCACTATCAGCACCTGCAGAGGGTACAAGCGCTAGCCTTGGGGGCAGAGGGCGCTGCTGTGGTAACAGCATCGGGCACGCAAGTCCGCGTGGACGGCCCCGTCGATAAGGGCTACTGGAGCAAGCTGTGTCAAGTGGAGCTTCAGAAGCCGGTTGAGTTTCTCCAGCTGGTTCCTGAGACGGAGGGGGTGCTGACTGTGGCCTCCGCGTGTGAGACCGTGCATCTGCTGAGGCCAGAGCAGGCTCCCTCGGTCCTGCACTGTGTCTATGGGCACCCTGTCACCTGCCTCGATGTGTCCTGCTCTCAGGCAGCCCTGGGGGTGAAGAGCCGTGGGTGGGCCATGAACGATGGCAACAAGATCCAGGTGTACAGTTTACACACGGGTCAGGCAGTGCTGTCAATGGGGAATTCTGCGGGAGATTTTACTTGTGTCAACCTGAGAGACAGTCCCAGTAACCTGCTGGTATCTGGCAACAAAGACAGGAGAGTGCGGGTGTTTGACCTGCGCACTGGCAGTCAGGTGACCTCCCTGTACGCCCATCACCTGGGGGTGTCCGCTGTGCAGGCAGACGACTGGAAGATTGTAAGTGGGGGGGAGGAAGGACTGGTCTGCGTGTGGGAGATGAGGATGGGAGCCAAGCTGTGGGAGATTCACAACAGACACCCTGTCCGTCATATTCGTTTCCGCACCAGCACACTGATCACAGCCAACGTGCCGGACGAGAAGTCTCCTCGAGGGGCTTGCATCACTGACGATGACCTGACCGCACACCGCAGGCACAGAGGGGTCATCTACTTATACGACTTCTCAGTTGACACCTCCGCCTCAGAAAACGTCCTGCCCATCTGCCGCTCGGACTACGTCGAGTCCACGGGCTACAACTACAACATCGGGCTGGCGGTGCCGTATGACGTGCTGGCAGGAGCCAAGCCCGCGCTGTGAGAACCCAGAGGAACCCAGTTAGAACAGGAACTTTGCAAACTTAATATCGACTTCACAATTCCAAATCGGGAACTCCAATGCTTCAAAAAAGGATGCTGCATagactgaaacacaaacatgattttatgtaaaaaccttttttaaaacgtccttttatttatacatcacttttcttttaatatccACGATTAGCCTTTCTTTTTAGACCAAATGCAGGACTTCTATAATGAAAGGCTATGTCATCAAACCTGTTTGTGTTGGACTTTGGTCTTTGGATGTTTAAAAACCACACTAGCTCATCAACGGAAGTACAGCAGTTCTGCCCTggacagtatttttttatgttattatagatatgtataattaaatagatGCAgtcaaaggaaaacacacattttgttgtgaatttttatttcactagactttttccatttacaagtgttcattttaaggaaataat

Function

GO: NA

KEGG:

id description
K10264 FBXW8; F-box and WD-40 domain protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147720 lncRNA upstream 221895 17584751 ~ 17585112 (+) True G117887
TU147627 lncRNA upstream 553984 17250869 ~ 17253023 (+) True G117813
TU147622 lncRNA upstream 582398 17224012 ~ 17224609 (+) True G117808
TU147619 lncRNA upstream 645284 17161514 ~ 17161723 (+) True G117805
TU147618 lncRNA upstream 645967 17160762 ~ 17161040 (+) True G117804
TU147816 lncRNA downstream 155411 17979011 ~ 17980939 (+) True G117959
TU147850 lncRNA downstream 157610 17981210 ~ 17983017 (+) True AMCG00018681
TU147877 lncRNA downstream 394203 18217803 ~ 18218099 (+) True G118005
TU147886 lncRNA downstream 642768 18466368 ~ 18730812 (+) True G118013
TU147918 lncRNA downstream 850674 18674274 ~ 18676226 (+) True G118043
AMCG00018673 mRNA upstream 3059 17797953 ~ 17803948 (+) True AMCG00018673
AMCG00018666 mRNA upstream 17567 17786712 ~ 17789440 (+) True AMCG00018666
AMCG00018665 mRNA upstream 24307 17779697 ~ 17782700 (+) True AMCG00018665
AMCG00018667 mRNA upstream 36471 17752323 ~ 17770536 (+) True AMCG00018667
AMCG00018672 mRNA upstream 57888 17742952 ~ 17749119 (+) True AMCG00018672
AMCG00018679 mRNA downstream 17152 17840752 ~ 17866985 (+) True AMCG00018679
AMCG00018678 mRNA downstream 110145 17933745 ~ 17959525 (+) True AMCG00018678
AMCG00018681 mRNA downstream 157540 17981140 ~ 17982059 (+) False AMCG00018681
AMCG00018685 mRNA downstream 199427 18023027 ~ 18035628 (+) True AMCG00018685
AMCG00018686 mRNA downstream 314445 18138045 ~ 18139541 (+) True AMCG00018686
TU147595 other upstream 737337 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 2850427 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 3018874 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 3030513 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 3459266 14345090 ~ 14347741 (+) True G117178
TU147848 other downstream 157610 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 157610 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 895606 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 1625026 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 2147539 19971139 ~ 19974730 (+) True AMCG00018762

Expression Profile