RNA id: AMCG00018669


Basic Information

Item Value
RNA id AMCG00018669
length 3908
RNA type mRNA
GC content 0.40
exon number 13
gene id AMCG00018669
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17638267 ~ 17677169 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcaaagaaaaagaacaaacccTTGAACCTCAAGATTCACAACAGCGTGGGAAGCTGCGAGAACATCCCCTCCCAGCGATCCCCTCTTCTCTCGGAGCGGTCCCTGCGCTCTTTCTTTGTGGGGTATCCAACTTTCCTGCCCTCCACTCCCCCCGTTCACTCTGAAGCCACTTTCTCTGCAAacACACTCTCAGTGCCTCGATGGTCTCCTCAGATCCCCCGCAGAGATCTGGgaaattcaataaaacacagATTTTCCACCAAATACTGGATGTCCCAGACATGCACTGTATGTGGAAAAGGAATGTTGTTCggtctgaaatgtaaaaactgcAAGTATGTCCTTTGCTTCCTCGAAAGTTGTGCTAAGAGACCGCCAGATTCCAGCAGTAATCCCTCTTCAACAACCTCCTCCACCCCATCATCACCAGCACCCCCTCTTCCTCCCAGTGCCACCCCCCCATCACCACTGCACCCGTCCCCACAGTGCACCCGGCAACAGAAACAGTTCAACTTAACAACTTCTCATTACTTCAAATACAAGCAGCAGTTCATATTTCCAGATGTTGCGCCAGAAGCACCAAGCAGAGCACCCCAAGTTATTCTGCATCCTGTCAACTCTGATTCCGCAAATGAAGGGAAACCTATACTACAGATTGAAGTCGAACCTACATCAGAGAATGAGGACGGGAACGATGAGGCGGAGGACTCTGAAGACGAATTCGAGGAAATgaacctctctctcctctcggCCCGCAACTTCCCCCGCAAAGCCAGTCAAACCAGCATCTTCCTGCAGGAGTGGGACATCCCCTTCGAGCAGCTGGAGATCGGGGAGCTCATCGGGAAGGGGCGCTTCGGCCAGGTTTTCCACGGGCGCTGGCACGGCGAGGTCGCCATCCGCCTCATAGACATCGAGAGGGACAACGAGGACCAGCTGAAGGCCTTCAAGAGGGAGGTCATGGCCTACCGCAACACCAGACACGAGAATGTTGTGCTGTTTATGGGGGCCTGCATGAGCCCTCCTCATTTAGCCATCATTACCAGCTTATGTAAAGGAAGAACCCTTTACTCTGTTGTGAGAGATGCCAAAGTTGTCCTTGATGTCAACAAAACCAGACAGATTGCACAGGAAATGGTAAAGGGAATTCTTCACAAAGATATGAAGTCCAAGAATGTATTTTACGATAATGGTAAAATTGTCATCACTGATTTTGGTCTCTTCACCATCTCCGGAGTATTACAGGCGGGCAGCAGGAGGGAGGACAAGCTTCGAATCCCCAATGGATGGCTGTGTCATCTGGCTCCTGAAATAATTCGACAGCTTTCCCCAGACACAGAAGAGGACAAACTTCCATTCTCAAAACAGTCTGATGTGTTTGCATTTGGGACTATATGGTATGAATTACATGCACGTGAGTGGCCTTTCAAGAATCAACCAGCAGAAGCAATTATATGGCAAGTTGGAAGTGGAATGAAGCCAAATCTCACACAGATAGGCATGGGCAAAGAGATATCTGACATCCTGCTTTTCTGCTGGGCATTCGAGCAGGAGGAGAGACCCACCTTCTCCAAACTTGTAGATATGCTGGAAAAATTGCCAAAACGGAACCGTCGCCTTTCCCACCCAGGACACTTCTGGAAGTCAGCTGAGTATGTCAAatgagttaggaacaaaacctTTGAAAGCACTGACAAGCAACCAATGGCTAAACTACCTGAGTTTTGCATTACCCTTGGATTATGTACATAATGTGCATAGTTAATCAATGGTCCCCAAAGTTAGAATCTATTAGCCCAGTGCTGCGGACAAACGTTTTTGCTACACCCGGGACATTGAATCTCTTTATTTGACAACTTCATcaacccctcccccaccccttccctttttgtttggatttggttttattttgatgaCCGTTCTCTAGTTTCATTGCCGTGTTATGAGCCACTACATATGTGTTTACTGCATTTTacttaaacaaatgcattttttaacactttgTTTTTACAAGAATGTAGTTTTAGTTTGTCaacagatcaatgtaattaTGTTATGAAtcctgcaaatgtatttatttttgccatctGTCCCGTTTGTCCCCACTGATCTTGtcactgttttatttctgtggtCATATATGtggatgtatgtatgtgttccGTACATTTCAATCACAAAGCTTTACACCTGCAGGGAATTATCAGTAACATACTacataaacacatgcatttgCCTGCACATGTGAGGGTAGGGAGTTTTATAATTGAACAATTCAAATTTGACATGCAAATCTGTAACTAaggcaacaaaaaaaatacctgTGAACTTGATTCTGAAAATAACTaactatgaaaaacaaacaaactgaaatcttTCTGACACACAGTTGGAAAAGCATTGTAGGTACTAGAAGATACTGAATGTGATAAGAATTTGACacttgaaatgtaatataataactgtgacaaatgaatacattagtTTGATTAAAATGCTGATATAGAGCCTGTGTTCTGCACTTTTAGTCAAaaagggattttgttttatataacaaaGGTCAAatttttatatcaaattaatcttatgtatgtgaatatattttaaataaaaacaaacaaaaataaatctacaaatCATATCAGAATGGCGATCATTCGAACCTTGGGCCTTACATTTGAATAGAATCAGAAAGGAACATATTTGAAATCCAAAACATGTCAATGTATATCTCTGACTAAGCATGGGCAGACTGTTGCATGCTTAAGAAATATTGTGTCACAATTTAGTACTTTAATGTCCAGTCTGCCTATTTTTCAGCctctaatataataataatatttcattcaAGTCTGTTAGGCctccaaatatataaaaatatgaatgatattgattttaaaaacaagaggCTGCCTGAAACACCCAGAGTCATACTTATTAAacagcttttatatttttaaagtctcTGGAAATTTGTAAATGCAGTGCCATGTCCAGTCGATGTAGACAATCCACTGATATATGTCTGTTTCtaccatatataaatatataaatacagtatctATACATACATCACAAgtgcataataaatatattgtgctGCTGCATAGGGTATTTCTGTCTATACTGGAAAACAACTCATAAATCACTCAAATTCAGTGgatcatatatatttgtacgtAATGTCCACTCTGATGTTTACAGTTTTAAGTGCATGAGACCCTTTTTCCTTAAAGTTTAAAGGATCGATCAATGTaattccaaaaaagaaaagaaaaaagagaaacgttgcattaagtattttaagaatatgtgaaaacaaagtTTCATGTTACTGTACTTGAGTATTTTCTGATGACTTATCCACAACTGTAGTTGTTGAGCCATCAAACAATTTGTtgctttgtaaaaacaaaaatgtgtaaaataattccTGTAATGCTATATTTGTACTATAACATATTATAAAGCTTCACAGACTGTGTTCGTTCTGGACAAGGGTACCACATACTTTGTGGAAAAGCTGGCAACGTAACAATTTGAGTTGAGCATCGACATTAGTGCCAAGTGTTTTAAAACAGGTAGTAGCTTTGTTTGACATTCCATGTCAATTTATGTGGGTTTGGTGTTAAGGGTCGCTGTTTTTTCTGGCTGTTGGGATTGTGTTGTCTTCTTGTCTTATTTCCGTTCAGACCTGTTTTGGGATTGCTAcacttttatttgttgttattgttgttgttgttgttgttgttgttgttgttgttgttttcttttgtaattcaATCATGTATTTTAGGGCCTAGAGCTAATAGCCTGTAATTGCAGCTGCCTTATGGTCTGTGGCTTAGTGACAGAGATGGATTGATCATGAGCTATTTATTTGCACTCATCTTCTACCTGTGTATGAC

Function

GO: NA

KEGG:

id description
K18529 KSR2; kinase suppressor of Ras 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147720 lncRNA upstream 53155 17584751 ~ 17585112 (+) True G117887
TU147627 lncRNA upstream 385244 17250869 ~ 17253023 (+) True G117813
TU147622 lncRNA upstream 413658 17224012 ~ 17224609 (+) True G117808
TU147619 lncRNA upstream 476544 17161514 ~ 17161723 (+) True G117805
TU147618 lncRNA upstream 477227 17160762 ~ 17161040 (+) True G117804
TU147816 lncRNA downstream 301842 17979011 ~ 17980939 (+) True G117959
TU147850 lncRNA downstream 304041 17981210 ~ 17983017 (+) True AMCG00018681
TU147877 lncRNA downstream 540634 18217803 ~ 18218099 (+) True G118005
TU147886 lncRNA downstream 789199 18466368 ~ 18730812 (+) True G118013
TU147918 lncRNA downstream 997105 18674274 ~ 18676226 (+) True G118043
AMCG00018663 mRNA upstream 44571 17585520 ~ 17593696 (+) True AMCG00018663
AMCG00018662 mRNA upstream 53703 17577935 ~ 17584564 (+) True AMCG00018662
AMCG00018659 mRNA upstream 63836 17546960 ~ 17574431 (+) True AMCG00018659
AMCG00018655 mRNA upstream 341280 17290702 ~ 17296987 (+) True AMCG00018655
AMCG00018654 mRNA upstream 381410 17253155 ~ 17256857 (+) True AMCG00018654
AMCG00018670 mRNA downstream 27325 17704494 ~ 17728160 (+) True AMCG00018670
AMCG00018671 mRNA downstream 55410 17732579 ~ 17740121 (+) True AMCG00018671
AMCG00018672 mRNA downstream 65783 17742952 ~ 17749119 (+) True AMCG00018672
AMCG00018667 mRNA downstream 75154 17752323 ~ 17770536 (+) True AMCG00018667
AMCG00018665 mRNA downstream 102528 17779697 ~ 17782700 (+) True AMCG00018665
TU147595 other upstream 568597 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 2681687 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 2850134 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 2861773 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 3290526 14345090 ~ 14347741 (+) True G117178
TU147848 other downstream 304041 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 304041 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 1042037 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 1771457 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 2293970 19971139 ~ 19974730 (+) True AMCG00018762

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060043 False 1873 mRNA 0.52 15 NC_007116.7 12285726 ~ 12407194 (-)
grasscarp (Ctenopharyngodon idella) CI01000071_04903716_04959830.mRNA False 1882 mRNA 0.49 16 CI01000071 4903716 ~ 4959861 (+)