RNA id: AMCG00018670


Basic Information

Item Value
RNA id AMCG00018670
length 4179
RNA type mRNA
GC content 0.48
exon number 27
gene id AMCG00018670
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17704494 ~ 17728160 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGAATTTGAGCCTTGCGTCTATCAGCTCCAACCGAATATCATTTCAGTCAAGCTTTTCAAAAGGAAAGTCGGGGGCCTTGGTTTTTTAGTGAAGCAAAGAGTCTGCAAACCCCCAGTCATAATATCTGATCTGATCAGCGGAGGTGCAGCAGAAGAATGTGGTCTCATTCAAGTAGGGGATATCGTCCTAGCTGTAAATGATAAGCCTTTGGTTGATATGAGCTATGAGAGGGCCCTAGAAATGCTGAAGAATATTTCATCAGAGACATACGCAGTTTTGATTTTGAGAGGGCCAGAGGGATTTACCACCCACCTGGAGACTACTTTTTCTGGAGATGGGAAACCAAAGACTATAAGAGTCACGAAACCACTGTATCCCATGTCCAAATCATTCGACAGCACCACTCAGGGCCTGCAGAACAGCAAGGAAGAATTCAGAGCCATCGAGAACCTTCCTTCTCACCGAGAGTTTGGTCAGGAGGAAAACCCCCTGCTTCAGATCAATGGCATTGTTTCTCTGATTGGGCAGGATCCCTTGAAAGACAATGCCTGCATGCCCGATCATGACTCCCTTCTCAATGGTGGGGAAGAGAACAATGACCTGCTGAAAGAAATTGAACCTGTGCTAAACTTGTTAAAGAACAGCAAAAGGGAGATCAGTGTGGAAGGTCTTCGTAAGACAGAAAAGCGAGATGCAGAAGTCCAAGTGGAGAgGGATCTAACCCCAGTGAACCAGAAATCGCTACAGCTAGCAGCGGATAATGACAGAGTTTTTGATGACCTATGGAGGAAGGACAATATGCCCGTGGTCCTCAACAATCCTTACTCAGAGAGTGAACAGCCATTGTCTGAAGGCAGGATATCACCGACAAAGAATGCAGCAAATGGTAGCCCTTCCAAATGTCCTCGCTTCATGAAAGTGAAGAACTGGGAGAGTGGCAATGTTTTAAGTGATACATTACATGTAAACTCCAGTAAGCAGAACCGCAAATCAGACGAAGTAAGAAATAGGGAGGAGTTGCTTCCCCTTGCAACTGATTTCATTGATCAATTTGCTTCCAAAGCCCATGTGGATAGACTGGAAGAAGTGACTAAGGAAATAGAAGCTTCTGGATCATATCAGTTGAAAGACACAGAGCTCATCTATGGAGCTAAGCATGCCTGGAGGAACGCTGCCAGGTGTATTGGAAGGATTCAGTGGTCTAAGCTTCAGGTATTCGATGCCAGGGACTGTACGACAGCTCATGGGATGTTTAATTACATCTGTAATCACATCAAGTATGCCACCAACAAAGGCAATCTCAGgtctGCTATCACCATATTTCCTCAGCGGACAGATGGTAAACATGATTTTCGTGTCTGGAACAGCCAGCTGATCCGATATGCCGGCTATAAGCAGACTGATGGGTCTATTCTGGGGGATCCGGCTTCTGTGGAACTCACAGAGATCTGTATTCAGCAAGGTTGGAAAGCACCGAAAGGACGCTTTGATGTCCTGCCTCTTTTGCTCCAAGCAAATGGAAATGATCCCGAGCTCTTTGAGATACCAGCTGACCTTATCTTGGAAGTGCACATTAGGCATCCAAAGTTCGAATGGTTTAAAGATCTCAATTTGAAATGGTATGGCCTCCCAGCTGTGTCCAACATGCTGCTGGAAATCGGAGGACTAGAGTTCACAGGCTGTCCCTTCAGTGGCTGGTATATGGGGACGGAAATTGGGGTTCGGGACTTCTGCGACAGCTCCCGTTATAATGTTCTTGAGGAAGTAGCCAAAAAGATGGGTCTGGATACCAGAAAGACATCATCTCTGTGGAAAGACCAAGCACTGGTGGAAGCTTCTAAGGTGACTATAGTGGACCACCATTCTGCCACAGAGTCCTTCATGAAGCACATGGAGAATGAGTACAGGGTGCGAGGCGGCTGTCCGGCAGACTGGGTGTGGATCGTCCCGCCAATGTCTGGGAGCATCACCCCAGTGTTCCACCAGGAGATGCTCAACTATCGCCTGACCCCATCGTTTGAGTATCAGGTGCGGCTGACGAATGCCCTTTACTTCGGGATCACGATGCCGGATCCCTGGAATACTCACGTGTGGAGGGGAGTGAACGGAACACCGACCAAAAAGAGAGCTATCGGCTTTAAAAAGTTAGCAAAGGCCGTCAAGTTCTCAGCGAAACTGATGGGCCAGGCCATGGCTAAGAGAGTGAAAGCCACTATATTGTATGCCACTGAAACTGGGAAGTCTCAGGTCTATGCAAAAACCTTATGTGAGATTTTCAAACACGCCTTTGATGCAAAGGTGATGTCTATGGACGAATATGACGTTGTGGATCTGGAACATGAGACCCTCGTTCTAGTGGTGACTAGCACATTTGGTAATGGAGACCCACCTGAAAACGGAGAGAAATTTGGTTGTGTTTTGATGGAAATGAGGCATCCCCACTCCAATTCTGAGGACAGAAAGAGTTACAAAGTTCGCTTCAACAGTGTCTCATCATACTCAGACGCACGCAAATCTTCGAGTGATGAACCTGAGCCAAGAGACAACTTTGAAAGATCCAGGGCCTACCCTCATTTCTGTGCCTTTGCTCGTGCTGTGGACACGTTGCTGGAGGAGCTGGGAGGAGAGCGAATCCTcaggatgggggagggggatgaACTGTGTGGCCAGGAGGAGTCCTTCCGAACATGGGCCAAAAAAGTGTTCAAGGCCGCTTGCGACGTGTTCTGCGTGGGTGACGATGTGAATATTGAAAAGGCAAACAACTCCTTGATCAGCAATGATCGGAGCTGGAAGAGAAACAAATTCCGCCTGACCTACACAGCTGAAGCTCCTGAGCTCACACAAGCACTGTACAGCATCCATAAGAAGAAGGTTTATGGAGCAAAGCTGATAACTCGACAAAATCTGCAAAGTCCCAAATCCAGTCGCTCAACAATCTTCCTGCGCCTCCATACAAATAGCTATGACAGCCTGCGCTACCGACCAGGGGACCACCTGGGGGTCTTCTCTGGGAACCATGAAGATCTAGTCACATCCCTTATTGATAAACTGGAAGACGCCCCTCCACTCAACCAGATTGTGAAGGTGGAGTTTTTAGAGGAGAGAACCACAGCTTTGGGTGTGATAAGTAATTGGACAGATGAGAATCGTACTCCCCCCTGCACCATCTTCCaagcttttaaatatttcctggACATCACCACTCCCCCCAGCCCTCTGCTGCTGCAGCAGTTTGCATCACTGGCAACCAACGATAAGCAGAGGAAGAAGCTGGAAGTTCTCAGTAAGGGTTTACAAGAATATGAGCAATGGAAATGGTACAACAATCCCACCATCGTGGAAGTCCTGGAGGAGTTCCCGTCTCTGCAGATCCCCTCCACCCTCCTGCTTACCCAGCTGCCTTTGCTCCAGCCTCGCTATTTCTCCATCAGCTCCTCCCCCGACACCTATCCCGAAGAGATCCATCTTACTGTGGCTGTTGTCTCCTATCGCACCAGAGACGGAGAAGGACCTCTGCACCATGGTGTCTGCTCTTCTTGGCTGAACAGGATAGAAACAGATGAAATTGTTCCCTGTTTCGTCAGAGGTGCTCCATCTTTCTGCATGCCCAAAGATCCCAACGTCCCTTGCATCCTTGTGGGTCCTGGGACTGGAATTGCTCCTTTCCGAAGTTTTTGGCAACAGAGGCTGTATGATATTGAACACAAGGgCATTAAATCCAGCCCTATGATCCTAGTCTTTGGGTGTCGACAATCCAAAATGGACCACATCTACAAAGAAGAGACCATTCAGGCCAAAAACAAAGGCGTGTTTAAAGAACTGTACACAGCATACTCAAGGGAGCCTGGGAAACCAAAGAAATATGTTCAAGATGTGCTCCGTGAGCAGCTGGCTGAGACCGTGTACACCTCTCTGAAGGAGCAGGGAGggcacatatatgtgtgtggagATGTCACGATGGCTGGGGACGTCCTAAAGACCATCCAGCACATAGTGAAAGTGCAGGGAAACATGCCACTGGAAGATGCTGGCTTTTACATCAGCAAACTGAGGGATGAAAACCGCTACCATGAGGATATCTTCGGTGTCACGCTGCGTACATATGAGGTCACCAACAGACTCCGCTCAGAATCCATCGCTTTTATTGAAGAAAGCAAAAAAGACTCTGAT

Function

GO:

id name namespace
GO:0031284 positive regulation of guanylate cyclase activity biological_process
GO:0045776 negative regulation of blood pressure biological_process
GO:0007263 nitric oxide mediated signal transduction biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0048668 collateral sprouting biological_process
GO:0006809 nitric oxide biosynthetic process biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0005829 cytosol cellular_component
GO:0005506 iron ion binding molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0004517 nitric-oxide synthase activity molecular_function
GO:0003958 NADPH-hemoprotein reductase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0050661 NADP binding molecular_function
GO:0010181 FMN binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K13240 NOS1; nitric-oxide synthase, brain

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147720 lncRNA upstream 119382 17584751 ~ 17585112 (+) True G117887
TU147627 lncRNA upstream 451471 17250869 ~ 17253023 (+) True G117813
TU147622 lncRNA upstream 479885 17224012 ~ 17224609 (+) True G117808
TU147619 lncRNA upstream 542771 17161514 ~ 17161723 (+) True G117805
TU147618 lncRNA upstream 543454 17160762 ~ 17161040 (+) True G117804
TU147816 lncRNA downstream 250851 17979011 ~ 17980939 (+) True G117959
TU147850 lncRNA downstream 253050 17981210 ~ 17983017 (+) True AMCG00018681
TU147877 lncRNA downstream 489643 18217803 ~ 18218099 (+) True G118005
TU147886 lncRNA downstream 738208 18466368 ~ 18730812 (+) True G118013
TU147918 lncRNA downstream 946114 18674274 ~ 18676226 (+) True G118043
AMCG00018669 mRNA upstream 27325 17638267 ~ 17677169 (+) True AMCG00018669
AMCG00018663 mRNA upstream 110798 17585520 ~ 17593696 (+) True AMCG00018663
AMCG00018662 mRNA upstream 119930 17577935 ~ 17584564 (+) True AMCG00018662
AMCG00018659 mRNA upstream 130063 17546960 ~ 17574431 (+) True AMCG00018659
AMCG00018655 mRNA upstream 407507 17290702 ~ 17296987 (+) True AMCG00018655
AMCG00018671 mRNA downstream 4419 17732579 ~ 17740121 (+) True AMCG00018671
AMCG00018672 mRNA downstream 14792 17742952 ~ 17749119 (+) True AMCG00018672
AMCG00018667 mRNA downstream 24163 17752323 ~ 17770536 (+) True AMCG00018667
AMCG00018665 mRNA downstream 51537 17779697 ~ 17782700 (+) True AMCG00018665
AMCG00018666 mRNA downstream 58552 17786712 ~ 17789440 (+) True AMCG00018666
TU147595 other upstream 634824 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 2747914 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 2916361 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 2928000 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 3356753 14345090 ~ 14347741 (+) True G117178
TU147848 other downstream 253050 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 253050 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 991046 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 1720466 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 2242979 19971139 ~ 19974730 (+) True AMCG00018762

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060038 False 4864 mRNA 0.49 29 NC_007116.7 12100669 ~ 12272689 (-)
grasscarp (Ctenopharyngodon idella) TU321447 True 1006 lncRNA 0.45 7 CI01000071 5030700 ~ 5040462 (-)
eurasian perch (Perca fluviatilis) TU321447 True 512 lncRNA 0.54 2 NW_024375502.1 476780 ~ 505923 (+)