RNA id: AMCG00018673


Basic Information

Item Value
RNA id AMCG00018673
length 2112
RNA type mRNA
GC content 0.49
exon number 10
gene id AMCG00018673
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17797953 ~ 17803948 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAACTTTTTGGACGCAATTGTGAAGAGTTGGAGGCAATGCAGAGGAGACACAGTAGCATCACTGATGGGCTACCACCTGAAAGGACGAGGAGTCAGACTGTTGGCTCAGAGAACAGCCTGGATGAAGGGGGGGTTTTTGAATGCCTGAAACCAGAAGCCCCCTCCCCGCAGCAGCTTTTCTCTGGCCTGGTGGGGGTCCCCTCAGGAAATGTGACGGCCGCCCCCTTCCAGGCGGCAGGCCTTGTCCTGGGGTCCCCACCGGAAGTTTTCATTCAGATGACTTCGTCTGCCAGGGAGGAAGGGCCTCTTCGCCCGGAGAGCACGCCGTACCTGCCCCGCCAACcccagcaccaccaccaccaccaccactaccaccaGCCGCCTTCGCACCGCTCCTCCCTGCTGCATGCCGCTGCCACGGATCGCCACGGGAATGGGGAGGACAGCTCGGAGGACCCCTCCACTCCTGCCCCTGCCCTGTCCGAGCTCCGCGCAGTCATATCCTGGCTTCAGAAAGGCTTCCCCTTCATCCTCATTCTGCTGGCTAAAGTCTGCTTCCAGCACAAACTGGGAATTGCTGTGTGTATTGGGATGGCAAGTACTTTTGCCTGTGCAAATTCGACTGTGATACACCAAGTATCCCTACGGGAGAAGAGATCTGTGTTCGTTACCTTCTGGATTCTGACTTTCCTTGCTGGGAACACTGTGTATCTCTACTACTCGTTTAGCGCGGAGGAGTTATACAACAGCTTGATATTTATGAAGCCCAACCTTGACAGCTTTGATTTCTTCGATTTGATCTGGGTGGTTGGCGTCACCGATTTTGTCCTCAAGTTCTTTACGATTGGCCTGAAGTGCTTCATTCTTGTCCTGCCCAGAATTTTCCTTGCTTTCAAATCCAGGGGTAAATTCTACCTGGTGATTGAGGAGCTGAGCCAGCTGTTTCGAGCCCTGGTCCCCATCCAGCTGTGGTACAAATACATCATCGGCGAAGACCCTTCCAACAGTTATCTCCTGGGGGGAGTGCTTATTATACTCTACAGTTTGTGCAAGTCCTTTGATATTTGTGGGCGAATCGGAGCAATAAGGAAAGCTATCAAGATGCTGTGCAGTTCCCAGAGTTACGGGGTGCGGGCCAGCAGCCAGCAGTGCAGCGAGGCTGGGGACGTCTGTGCCATTTGCCAGGCGGAGTTCAGGGAGCCGGTGGCCCTGATGTGTCAGCATGTGTTCTGCGAGGAGTGCGTGTGCCTGTGGTTTGAGCGGGAGCGGACCTGCCCCCTGTGCCGCTCGGCCATCATCGAGACCCTGCGCTGCTGGAGGGACGGCACCACCTCGGCTCACTTCCAGGTCTACTAATCCTGCAGCAGAGGAGGGCTGGCAATCAAGTCTAGGGCAGACTCGGCCATTAAAACATGATCTTCCTTCCCCCTTATGCTGGCTTTTTTTAAAGACAGTGTAGTGCATATATCTTAACCCTTTAACCGCCATCCATTGATGCCGGCAGAACGATTCCTTTTCCAATTCCAGTTCCAGATTCTTTTCGAATAGATGTGTTTGTTCCCCCTCTATACCAAGAAGATGAAGGGTTAACATCCATACATAGATTCAGGGCCATCTTTGTTCATGTTCcctccattttaaaatattttcttgcagTATTAATGCGTGTGGTTGGCAGATGACCTTGCATTTTAAACACGCTGCAGTGTGGAAAGATTGTGATCAGTTTCTAAGAACACTGTCTctgtgtaaaattaatattgagGCCCCTCACACACATGTTGCTGGCCTTTTTTGAGGAGCGAAAAGGACATTTCATGTTAAGTGTTCAAAAAGGTTATAACACAAAAAGCAACTTAATTTTGCTGTAGGGATTTGAGTTCGGAATTTTAATGTTATGGTATAGCAAGCGCTCTAAGATTTAAACATCAGATAGCGCCCTCTAGTGTAAGTCTGTCTGAACTGCATATATACTGATTTCCCACGaactaattaataatttagataTGCAATATGGTTTtattagatttagttttttgtcaacttgcttttgttgtttttgttagtgCTGATTCTGTACTGAAAATAAAGCCCTAAATATGACCAGAA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147720 lncRNA upstream 212841 17584751 ~ 17585112 (+) True G117887
TU147627 lncRNA upstream 544930 17250869 ~ 17253023 (+) True G117813
TU147622 lncRNA upstream 573344 17224012 ~ 17224609 (+) True G117808
TU147619 lncRNA upstream 636230 17161514 ~ 17161723 (+) True G117805
TU147618 lncRNA upstream 636913 17160762 ~ 17161040 (+) True G117804
TU147816 lncRNA downstream 175063 17979011 ~ 17980939 (+) True G117959
TU147850 lncRNA downstream 177262 17981210 ~ 17983017 (+) True AMCG00018681
TU147877 lncRNA downstream 413855 18217803 ~ 18218099 (+) True G118005
TU147886 lncRNA downstream 662420 18466368 ~ 18730812 (+) True G118013
TU147918 lncRNA downstream 870326 18674274 ~ 18676226 (+) True G118043
AMCG00018666 mRNA upstream 8513 17786712 ~ 17789440 (+) True AMCG00018666
AMCG00018665 mRNA upstream 15253 17779697 ~ 17782700 (+) True AMCG00018665
AMCG00018667 mRNA upstream 27417 17752323 ~ 17770536 (+) True AMCG00018667
AMCG00018672 mRNA upstream 48834 17742952 ~ 17749119 (+) True AMCG00018672
AMCG00018671 mRNA upstream 57832 17732579 ~ 17740121 (+) True AMCG00018671
AMCG00018668 mRNA downstream 3059 17807007 ~ 17823600 (+) True AMCG00018668
AMCG00018679 mRNA downstream 36804 17840752 ~ 17866985 (+) True AMCG00018679
AMCG00018678 mRNA downstream 129797 17933745 ~ 17959525 (+) True AMCG00018678
AMCG00018681 mRNA downstream 177192 17981140 ~ 17982059 (+) False AMCG00018681
AMCG00018685 mRNA downstream 219079 18023027 ~ 18035628 (+) True AMCG00018685
TU147595 other upstream 728283 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 2841373 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 3009820 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 3021459 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 3450212 14345090 ~ 14347741 (+) True G117178
TU147848 other downstream 177262 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 177262 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 915258 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 1644678 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 2167191 19971139 ~ 19974730 (+) True AMCG00018762

Expression Profile