RNA id: TU147850


Basic Information

Item Value
RNA id TU147850
length 1358
lncRNA type sense_over
GC content 0.45
exon number 2
gene id AMCG00018681
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 17981140 ~ 17983017 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCCGCTCTGGGGCTACTACCGCTTTCAACATGGCGCTCGGTCGGCAGATCTACAACTTGCTCTTCAAGAGGACCTCCACCTTCACCCTGACCATCGTGGTGGCGGCCGTGGTGTTCGAGCGGGCCTTCGACCAGGGCGGAGATGCCCTCTTCGAGCAGCTCAATCGCGGGaaaCTGTGGAAACACATTAAGCACAACTACGAGAAGGAAGAATGACGTGCCTCTGTGCGGGACTGCGATCGGTCCTGATGCCATTCCCCAGCACTGGTGGAGACCCCCAGTAGGAGACCTCGGACCCCCAACCCCCGGGTCGCCATGCCCGGCAATAGACACTCAACTCAATTCCCTCCAGCCGCCACGACCAACAGCGGACACCACTCTGGCCATCATCCACCTGTGATTTATCGTTTAATGTATTGACATTTAATTAGTAATAAATACTCTTCAAACTCCTACAattcttaaatgtattgtttagcCCTGATCCTGTGTTCCCCATTTCACAATATTGCAAAAACACGTTTGATTAtggtttaattgtgtgtgtgggaggtggggaaatacaaatacaaaatccagACAATACCTTGTTCTACTGTAAACCAGATGCAACatgattcaaaatataaaacGAATGTAATGGCTGAAGAGACCCTTCTTATTgatatgcataatatatatatataattatatatgtttagtATGTATCTTAGACCCCTTTTACAAAGAACCAAAGAACAACTGatgcctttttttaatgataaaggGGGTATCAAGTCTAATATAAATCATTAGTATGTATTTGCATGCTTTTtgggcatttaaaaaatagcaaCTTGAGATTTGTGGTTTTAGCTCTTGTATGAATTTGTCATAATGGCTTTGAATTGCAGAAATATTGCAGTTCAACCACATTGTACACTTCGAAGAGGCTTTCCAATACACCACACATCAGAGCTCTAGTGTGAATTAGATGGGATTGTTATTTGTCAAGGTGATTGGCGTTATGCTTCTTCCGTAAGGGACATTTAGAATTTGGTTGATATCCAGCTGTGGGTTGCTTTCCTTGCCTTTGAACTGTCGGAGGTAAAATTGCAGGGTCAGTTTCCGAGTCATGACTTTGAGTCCCAGGAAGGCAGCCAAGATCTCCGAGAGGATGAAGAGGAGGTAGATGATGTGGATGGCTCGCTCCAGCGGAAGGATGATGATCCCTTCGTCCATCAGGAAGAAAAGCACGATGGGGAGCTGGAACAGGAAGGTAAGGAGCCAAAAGCCGGCCAGCTCTGGCACCTGATAAAACAGTGGAACGAAAAATGGTGGGTGGAAAAAGTCAGTGGAAAGACTTAAATGAAATAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147816 lncRNA upstream 271 17979011 ~ 17980939 (+) True G117959
TU147720 lncRNA upstream 396098 17584751 ~ 17585112 (+) True G117887
TU147627 lncRNA upstream 728187 17250869 ~ 17253023 (+) True G117813
TU147622 lncRNA upstream 756601 17224012 ~ 17224609 (+) True G117808
TU147619 lncRNA upstream 819487 17161514 ~ 17161723 (+) True G117805
TU147877 lncRNA downstream 234786 18217803 ~ 18218099 (+) True G118005
TU147886 lncRNA downstream 483351 18466368 ~ 18730812 (+) True G118013
TU147918 lncRNA downstream 691257 18674274 ~ 18676226 (+) True G118043
TU148025 lncRNA downstream 844580 18827597 ~ 18832243 (+) True AMCG00018712
TU148059 lncRNA downstream 923389 18906406 ~ 18908956 (+) False AMCG00018717
AMCG00018678 mRNA upstream 21685 17933745 ~ 17959525 (+) True AMCG00018678
AMCG00018679 mRNA upstream 114225 17840752 ~ 17866985 (+) True AMCG00018679
AMCG00018668 mRNA upstream 157610 17807007 ~ 17823600 (+) True AMCG00018668
AMCG00018673 mRNA upstream 177262 17797953 ~ 17803948 (+) True AMCG00018673
AMCG00018666 mRNA upstream 191770 17786712 ~ 17789440 (+) True AMCG00018666
AMCG00018685 mRNA downstream 40010 18023027 ~ 18035628 (+) True AMCG00018685
AMCG00018686 mRNA downstream 155028 18138045 ~ 18139541 (+) True AMCG00018686
AMCG00018698 mRNA downstream 362940 18345957 ~ 18437784 (+) True AMCG00018698
AMCG00018697 mRNA downstream 544726 18527743 ~ 18528121 (+) True AMCG00018697
AMCG00018693 mRNA downstream 579516 18562533 ~ 18571339 (+) True AMCG00018693
TU147595 other upstream 911540 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 3024630 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 3193077 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 3204716 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 3633469 14345090 ~ 14347741 (+) True G117178
TU147936 other downstream 736189 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 1465609 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 1988122 19971139 ~ 19974730 (+) True AMCG00018762
TU148559 other downstream 2276360 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 2390979 20373996 ~ 20374812 (+) False AMCG00018781

Expression Profile