RNA id: TU148025


Basic Information

Item Value
RNA id TU148025
length 1374
lncRNA type sense_over
GC content 0.43
exon number 2
gene id AMCG00018712
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18827597 ~ 18840095 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGCCCCTCTACCTCCTCTCTGCGATACAGCTGATGTTTACAGCCATGGGTTTCGGTCactcttattttcttttatctttaatttctcttttctcaTTGTCCAATGGTCAGAACGGAGAACCCGGGCTACACGACCGTCCATTTGAGGTATTGAAACACCAGAATTTGGCCCTGCTAGTGAGCGTGCTCAGTGTGCTCCTGGTAGTCATGATCGTGATAGCGGTGTGTGTGTACAAGCCTCTACGCCGCCGCTAGCCTCTCACCGGGACTGGCTTGAGGCCACACTGCCGTCTGCCCGGGACACTGGATCTCCAGACCAACCTCCTCGTCCTCAGGACCGCGTGTCCTCTCCCGGCGACGTCATGGTGCCACACCTGCAATCTCTGTTCACCTGCTTGCTTATGCCTTTTGAGGCCCCATTTCTCTCCCATCCCTCAAAAGGAGTCACAGATTCACTCCCTCCCCACCCTCGTTCCATACTCCCGAGTCTGTCAACATGTACCTGTACGTATTAAACTACTGCGGCCAAATCCTGGAGTGAGAGAACGGCCATTCTTAAGCACCTCTCTCGATATTTGTGATGCACTTGGAGGATGCATTCCTTACAGAATATGACATTGCACTGATTGTGTGGTtcctgtatgtttgtttttttcttttaattttgatttctttgTCTTATAAGCatcttgtaaaaaaaagaaaccgcCAAATAACCTTAAGTCAAGTAGCTTCCTTATTggaaacaaattacacacactACCATAAGTAAGTATCCTGATGGGTAATAAACATTCCAGAAAAGAGTGGACTGGAGCCTCACGTTCCTCTCTGTGACTCATGCTTGCGCGGTTATTAGTGAGGGTAATGGAGATAGTATTGGATTGCTGGTCATCCAGGGGAAAGGCCCATTTTCTGACAACTGGACTGTATTTAAGGAAAGGttttggggcggggggggtgtaGAGCTGGCCTCTGACTactagtattttgtttttgttttacttttcccCCTGCCCATTGTTGTATAGTTTAGTTATGCACTGGACTGTAATTGACTTATAGCACAATCTTgtgtaataattatttaatgggGACCTTCAGTTCTAGAGAATGTTGACGTGTTGGTTTCATCTTAAGTTGTATGTAACAGCTGCTGCTTTATTTATGACACTGACCTGCACTTTCGTTTTTGGTTAAAAtatgatttctatatttttgtatgtcttatttattaacatttaaggtttttgtttaatcatacTTATTTATTGTAACGTTGATTTTTCAATCAttagtatttaatgtttttgtttcttcacacTTTCATCATTGTGTAGAAATCTGGAATAAAACCTCTCAATGCTGGCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147886 lncRNA upstream 96785 18466368 ~ 18730812 (+) True G118013
TU147918 lncRNA upstream 151371 18674274 ~ 18676226 (+) True G118043
TU147877 lncRNA upstream 609498 18217803 ~ 18218099 (+) True G118005
TU147850 lncRNA upstream 844580 17981210 ~ 17983017 (+) True AMCG00018681
TU147816 lncRNA upstream 846658 17979011 ~ 17980939 (+) True G117959
TU148059 lncRNA downstream 74163 18906406 ~ 18908956 (+) False AMCG00018717
TU148164 lncRNA downstream 391131 19223374 ~ 19227433 (+) True AMCG00018732
TU148221 lncRNA downstream 623899 19456142 ~ 19456983 (+) True G118285
TU148226 lncRNA downstream 635580 19467823 ~ 19473460 (+) True G118290
TU148227 lncRNA downstream 647448 19479691 ~ 19479956 (+) True G118291
AMCG00018711 mRNA upstream 6310 18809376 ~ 18821287 (+) True AMCG00018711
AMCG00018700 mRNA upstream 93013 18733107 ~ 18734584 (+) True AMCG00018700
AMCG00018708 mRNA upstream 98091 18729036 ~ 18729506 (+) True AMCG00018708
AMCG00018702 mRNA upstream 106458 18719468 ~ 18721139 (+) False AMCG00018702
AMCG00018701 mRNA upstream 137358 18685139 ~ 18690239 (+) True AMCG00018701
AMCG00018710 mRNA downstream 14333 18846576 ~ 18869867 (+) True AMCG00018710
AMCG00018716 mRNA downstream 44527 18876770 ~ 18885979 (+) True AMCG00018716
AMCG00018717 mRNA downstream 62092 18894335 ~ 18908931 (+) True AMCG00018717
AMCG00018720 mRNA downstream 215545 19047788 ~ 19050639 (+) True AMCG00018720
AMCG00018719 mRNA downstream 240861 19073104 ~ 19078777 (+) True AMCG00018719
TU147936 other upstream 106254 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 845294 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 845483 17981210 ~ 17982114 (+) False AMCG00018681
TU147595 other upstream 1757927 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 3871017 14954564 ~ 14956580 (+) False AMCG00018602
TU148213 other downstream 616383 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 1138896 19971139 ~ 19974730 (+) True AMCG00018762
TU148559 other downstream 1427134 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 1541753 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 1681917 20514160 ~ 20514491 (+) True G118623

Expression Profile