RNA id: TU148059


Basic Information

Item Value
RNA id TU148059
length 2358
lncRNA type sense_over
GC content 0.37
exon number 2
gene id AMCG00018717
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18894335 ~ 18908956 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCACCCCAGGGTGGATGAAGTGAACTGGTCTACCTGGAATCAGAACCTGGGAATCATCAACGAGGATCCGGGCAAAAACGAGACCTACCAGTACTACGGCATCTCGCAGACTGTCAGGGGGCTGAGGAGAGATCGCTGGTCCACAGTTGTCCCCAGGGTGGtggagcaaaataaaaacccGCGGTCTGGGGAGGCAGTGGTGGAAATGGAGCAGTTTGAGCCCCTCAATCCTGGACACAAGTACATCGCCGAGAGACACAACTGACACTGAGACAAAGAGCCACACACTCTCGCTACCAGGGCCCGGCCCGAACTGGAGTGGGTGAGATGGAGCGGAGAGGTGACGCGtgcaccctctctctctcttccattgCACAGACCAGGTTTTGCGAGTTTGCACAGACGTCTGCTGTAGTGCCTATTATTTGTCTACCACGTATGAGGGCGTGTTTACCAAAGATGCTTCCTATGAGGAAGATTAGGCAAACATCTCATAGTTAAAAACGGTTTTATTTTAACCACAGGACATTGATTTTAGAAGGAACTGGTTTTgtactgctttaaaatgtattttttgaaatCAAAGCCAAggtcaaatgtatatattgtttaattttgttacaaAGTATCACTCAGGGATTTTAAGAAGCAGGAAATGTATGACAATCATTGCCAGTCTACCGCTGAAATTAAATCCTATTTTTAAGTTTGTACTGACAAATCCTATAGATCTTTAACACTGTGTATCGGACAGGCTAAatttttctatttatgtttAGTAGTCAGGGAGTGATTTTGAAGTAATTTGTGGCCCCtgtacattttctattattatttaaactttttaggTTCTGTATAATATCGATTTTAACCTTTCACAGCTCAGATATGGCTTATAAACCTAGGATAACTGAATAACCTTAAAATCAAGATGATTTAATGCTGTACTATTAGACATACCATGCAATTCAGGATAGAGCAGTACAGTTGCATCACAATAATCCTACACTAGGTGCCAGTGTAGCACACATTATAGGGAACCTGAAGGAAAACTGATTTCTgatttcttcagaaacatgcaGTGCCAGATTTTCACGTGAACGTTTTGAAAATTCAAGGCAATGAGCAAATCGTAGTCTCTGTCTGCAAAATGTGGTAATTaactgaaaaatacagaaaaggaaCAATTTGCAGTGAACTGCAGTAGAATTGAAGGGGAATAAATGGTCCCAgtgcattaattaaatgttaaatgaacTGGAGTGTTTGACATGACCGCACTATATAACATGGGTGTGATATATGAATGAACAGTGTGCGCATGCAGTTCATATcattgcttctgtttttaaaatacaaacttatTGTACTACGaagaaagatgtattttaatcatgtaattcctgtaattatttatagcttgtttgttattttctagATCTAGAGACCTGCTTTAAGAGAATACCTCCGTGAAGGccacaaatgttttaataccATATTTAAACTTATTATGCATGTTTCCTGTTACCTTGATGCTTTTCTTCTCCCATGCTAACACTTGAAGCTAGGCCAAACTATCTATTTTTCCCTAAACAAATCTGACTCTGGTGCCATCATCTACTTTAATATTTAGTTCTaccaaaacaatatacaatactatCTGgtaatacagtgtgtgtgtgtgtgtgtgtatatatatatacacacacacaccagtctTTGACCAATGATAAATAACTACATTCGTCTTGTATATTTATGGAACCTTTTTTTGGATGGGTCATGCTTTTCATTTAGTGgcagtttttgtttagtttctgtttCCCACAAAGCTAACATCAAGAGGTAAAGGCACATTTCAAGTTAGACACTACTTCTGTAATTATCCAATTCAGTGCAACTATCATGTGAAtatctttttcctttctttttatttttatacctgGCAGCATTTTTTGCAACAGCTGAAGACAAATCAGGTCTGTACAGATAttgattacatatttaatagACATTACAAGCCCCCTCGTGTCCACTGACTGGGTGGAAATCCGTGTGGGTTATGGTAGGAGAGTTctagaatgttttttaatgtggaaTGACTTTGAATAGGAGAGCTTGGTTAACATATTCACTtttcaaaatagattttaaaaagtagtttttttttttttaaccttgtataaatatttttttattagacagcattttcactttccttttcttgtgTATTAATGTCACTGTTGGACATTTTGAGGAATctcttttaaatgcttttttgtgCCAAAATTAAAGCACCtatgaagtttttatttatacattttttaagcctttgaaataaaagtatttaaaactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148025 lncRNA upstream 74163 18827597 ~ 18832243 (+) True AMCG00018712
TU147886 lncRNA upstream 175594 18466368 ~ 18730812 (+) True G118013
TU147918 lncRNA upstream 230180 18674274 ~ 18676226 (+) True G118043
TU147877 lncRNA upstream 688307 18217803 ~ 18218099 (+) True G118005
TU147850 lncRNA upstream 923389 17981210 ~ 17983017 (+) True AMCG00018681
TU148164 lncRNA downstream 314418 19223374 ~ 19227433 (+) True AMCG00018732
TU148221 lncRNA downstream 547186 19456142 ~ 19456983 (+) True G118285
TU148226 lncRNA downstream 558867 19467823 ~ 19473460 (+) True G118290
TU148227 lncRNA downstream 570735 19479691 ~ 19479956 (+) True G118291
TU148240 lncRNA downstream 668008 19576964 ~ 19579031 (+) True G118304
AMCG00018716 mRNA upstream 20427 18876770 ~ 18885979 (+) True AMCG00018716
AMCG00018710 mRNA upstream 36539 18846576 ~ 18869867 (+) True AMCG00018710
AMCG00018712 mRNA upstream 66311 18827700 ~ 18840095 (+) False AMCG00018712
AMCG00018711 mRNA upstream 85119 18809376 ~ 18821287 (+) True AMCG00018711
AMCG00018700 mRNA upstream 171822 18733107 ~ 18734584 (+) True AMCG00018700
AMCG00018720 mRNA downstream 138832 19047788 ~ 19050639 (+) True AMCG00018720
AMCG00018719 mRNA downstream 164148 19073104 ~ 19078777 (+) True AMCG00018719
AMCG00018725 mRNA downstream 199420 19108376 ~ 19116265 (+) True AMCG00018725
AMCG00018724 mRNA downstream 244502 19153458 ~ 19154597 (+) True AMCG00018724
AMCG00018730 mRNA downstream 256930 19165886 ~ 19181728 (+) True AMCG00018730
TU147936 other upstream 185063 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 924103 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 924292 17981210 ~ 17982114 (+) False AMCG00018681
TU147595 other upstream 1836736 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 3949826 14954564 ~ 14956580 (+) False AMCG00018602
TU148213 other downstream 539670 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 1062183 19971139 ~ 19974730 (+) True AMCG00018762
TU148559 other downstream 1350421 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 1465040 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 1605204 20514160 ~ 20514491 (+) True G118623

Expression Profile