RNA id: AMCG00018739


Basic Information

Item Value
RNA id AMCG00018739
length 1401
RNA type mRNA
GC content 0.52
exon number 1
gene id AMCG00018739
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19326479 ~ 19327879 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTGGGCGCCACTGTGCCCTGTTACTGATTCTCAGCGCTTCACACACCAACACCGGGTGCCCTGCAGGCTGCTGCTGCCCCAGCCCTGGTTCAGCCGTGTTCTGTGAGGACCTGGCCTTGAGACGTCTCCCCCGATCCTTTCCGCTCAACCTCTCCGTCTTATCGCTAGCTCGAAACCAGCTCTGCGATGTGGACCGCGCATTTCTCCCTTTCCCCAGGCTGCAGGAGCTCAGTCTGAGTCACAACCAACTGAGCTACTTCCCACGAGGTCTGCCTTCCAGCCTGGAAGCTTTACTGCTGCAGGCCAATAGGATAAGTTACCTCACAGCCAACAGCCTGAGGAAGCTGGGCAACCTGACCAGACTTGACCTGGAGGACAACCGCATCAGTGTGATCCAAGTCGGGGCCTTCAGGATGCTGAGGAAGCTGCAGATTTTGAGTTTAAAAGATAACAGACTGGCCACCATCCCCGACTCTCTGCCAGCCTCTCTAATACAGCTCAACCTAGCGAATAACTGCATCTCCACCATGGGCCGCAAAGCTCTCTCTGGCTTAGTGAACCTGCAGgtgttgaaaataaacaataattgcTTAACAAAGATCCCAGACAGAACTTTTGAGAACTTGTCGAGGCTCAGAACAGTCGAGTTGGCTGACAATTCATGGTGGTGCGAGTGTGATATTTTATACCTCTACAGGTGGCTTTTAAACAGCAGGTTGAAGATTGCTGCCCATCTAATGTGCGCGTTGCCCATTCACTTGGAAAGACGTCCTCTTCTCACTTTGTCTGTGGTAGACATGTGCCCCAGTGCACTCGAGTCAAATGACAGAGTCCTGCTCAACACCACAGTGTTGTATAATACCTCACAAAAAGATCACACAGGAGAAGAGGCTTCCCTGGGTCACTCTCGAGTCTCTACAGATACCTCGAAACCTCTCGAGAGCTCAGCCAACGTGACAAACGATCATTCTGAGGTGGCCTCATACTCTAATCAAACCCCTACACCTGAAACATCATCCAGACGTTACACTTTGGACAGAATGAACCATGCAGACTGCCAAGCTCTGACTACAAGTACAAATGTCCCTTCCGAAGCCCCAGCCATTACCACAGCCAAACTAATTCCCCAGCGGCTTCCCCTCTGTTCAGAGGACGTAACAAACTCCTATCACGTTGAAAACGTGACCAACTTGGAATTGAATGGTCCAGTATTCCTGACGATGAAGACCAGTGAAGACCAGCCTCCAACACACCCAGGGCCTTTCAGCCAACAGGCTGTCACAGCCGTCCTGGCCgtgctgtgtgtgctggtgCTCCTCGTGCTGCTGACTGTCCTGGCGTTACTGAAGCAAGCACTACGGAGGAACCAGAGGGTGGCTCCTGCAGAACAGCCTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148164 lncRNA upstream 99046 19223374 ~ 19227433 (+) True AMCG00018732
TU148059 lncRNA upstream 417523 18906406 ~ 18908956 (+) False AMCG00018717
TU148025 lncRNA upstream 494236 18827597 ~ 18832243 (+) True AMCG00018712
TU147886 lncRNA upstream 595667 18466368 ~ 18730812 (+) True G118013
TU148221 lncRNA downstream 128263 19456142 ~ 19456983 (+) True G118285
TU148226 lncRNA downstream 139944 19467823 ~ 19473460 (+) True G118290
TU148227 lncRNA downstream 151812 19479691 ~ 19479956 (+) True G118291
TU148240 lncRNA downstream 249085 19576964 ~ 19579031 (+) True G118304
TU148377 lncRNA downstream 666247 19994126 ~ 19994329 (+) True G118410
AMCG00018735 mRNA upstream 19739 19299948 ~ 19306740 (+) True AMCG00018735
AMCG00018734 mRNA upstream 30478 19289189 ~ 19296001 (+) True AMCG00018734
AMCG00018737 mRNA upstream 43513 19274909 ~ 19282966 (+) True AMCG00018737
AMCG00018732 mRNA upstream 92128 19223168 ~ 19234351 (+) False AMCG00018732
AMCG00018731 mRNA upstream 103533 19206055 ~ 19222946 (+) True AMCG00018731
AMCG00018736 mRNA downstream 4611 19332490 ~ 19345758 (+) True AMCG00018736
AMCG00018740 mRNA downstream 45593 19373472 ~ 19482092 (+) True AMCG00018740
AMCG00018743 mRNA downstream 278143 19606022 ~ 19612141 (+) True AMCG00018743
AMCG00018746 mRNA downstream 284746 19612625 ~ 19636734 (+) True AMCG00018746
AMCG00018745 mRNA downstream 348743 19676622 ~ 19677939 (+) True AMCG00018745
TU147936 other upstream 605136 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 1344176 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 1344365 17981210 ~ 17982114 (+) False AMCG00018681
TU147595 other upstream 2256809 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 4369899 14954564 ~ 14956580 (+) False AMCG00018602
TU148213 other downstream 120747 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 643260 19971139 ~ 19974730 (+) True AMCG00018762
TU148559 other downstream 931498 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 1046117 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 1186281 20514160 ~ 20514491 (+) True G118623

Expression Profile