RNA id: AMCG00018746


Basic Information

Item Value
RNA id AMCG00018746
length 3413
RNA type mRNA
GC content 0.49
exon number 15
gene id AMCG00018746
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19612625 ~ 19636734 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCCTGGCGACGGGACTGTTTCAGCTGCAACTCCTGTTCCAGGTGTTGCCGTTTGATCCCTACAGGTCTCCGTACTGGAATGTCAAGTGCATGACGTCATTCACCCTGCCAACAAGAAACTCCAGCAAACTCCCGGCAGAGCTGTTTCGCTTGTCTGTGAAGAAGAGGAATTTAAAGCCCAAATCTCAGTCACAGAAAAGCGTTACGTAACGCGGCGGTGCATCTCTTTCCCCCGACGATACTGCGGGGCCCCGGAGAATCATGTGAACTTCAGCAAAACCAATCTCGACCAGCAGCTAGATGGACGAACTGGAAGGTGCTCGCAGTGCTGTGACCTGTTGAATAACTGGTACTATGAGAAAGATGGCAAACTGTACTGCCACAAGCATTACTGGGAGAACTTCGGGGAGTCCTGTCACGGCTGCACTCTGCTCATGACTGGGCCAGCGATGGTGGCAGGGGAGTACAAATATCATCCCGAGTGCTTTGTTTGCCTGAGCTGCAAGGTGGTGATTGAAGAACAAGATACATATGCACTGAAGCGCTCTCCAGACACGGCCCGGGACTCCTTACCTCACACGTTCACCCTCCTCTCGGTGCCCGCGGCCACCAACGGCAAGAGGGGCTTCTCCGTGTCCATCGTCCGAGACTGCAGCATCACCAGCGTCCAAGTCAAAGAAGTTCTCGAAATGCACATCAGTCCAGAGGTGCGGAATGCTATCCACGCTGGTGACAGGATCCTGGAGATCAATGGAATCCAAGTGGGAGCCCTGATGGAAGACGAGGTAAAAGATTTGATTCATCGGACAAACCAGACCCTGCAGCTGCTGATCGAGTACGACCCAGTCAGGCAGCGTCTGGACAGGCTTCAACTGGGGTCCTCGCGCAACCGCCTGGGGGTGCCTGTCCCCTCTCCGCTGAGGCTGTCCCCACCCTCGGTCCTGGAAGGCAGGGACACCATTGATGACGGCACGCTGAAAAGGAAATCTCTGAGgcgCAGTAATAGTATTTGTAAATCGCCCGGCCCTGCTTCTCCAAAGGAGCACCCCACCCTGACGCGGGACATCAGCCGCTCCGAATCCCTGCGCTCGTCCTCCAGCTTTTCCCACCGCATCTTCCGCCCCTGCGACCTCATCCACGGGGAGGTGCTGGGAAAGGGCTTCTTCGGCCAGGCCATCAAGGTTACACACAAAGCCACCGGAGAGGTGATGGTGATGAAGGAGCTGATTCGTTGTGACGAGGAAACTCAAAAAACATTCCTGAAGGAGGTGAAAGTAATGCGCAGCCTGGAACATCCCAATGTCTTGAAATTTATTGGAGTCTTATACAAGGACAAGAGACTGAATTTAATAACGGAATTTATCGAAGGGGGGACACTAAAGGATTTCATCAGAGACATGGATCCGTTCCCATGGGAACAGAGGATCAGTTTCGCCAAGGGCATTGCTTCTGGAATGgcTTACCTCCACTCGATGAGTATCGTCCACAGAGACCTAAACTCTCACAACTGCCTGGTCAAACTGGACAACACGGTGGTGGTGGCGGATTTTGGACTGTCCCGTCTGATTGTTGAGAACAAGACCAGAAGCCCGCCAGAGAAGCCCACTGCTAGAAGGAGGACTTTGAGGAGAGTGGACCGCAAGAAGCGCTACACCGTGGTGGGAAACCCATACTGGATGGCACCAGAGATGCTCAATGGTAAACGCTACGATGAGAAAGTGGACGTTTTCTCTTTTGGGATTATGCTGTGTGAGATTATTGGACAGGTATATGCAGATCCAGAATGTCTGCCCAGGACGTTTGATTTTGGGCTGAACGTGGAGAAGTTTTCTGAAAAGTTCCTCCCTGAAGATTGCCCGCCGGCCTTCTTCCCCCTGGCTGTCGCCTGCTGTGATCTCACCCCCGACAGCAGGCCTGACTTTAACAAACTGGAGGACTGTTTCGAGGCCCTGGCCCTGTACCTGGAGCTGGGCATCCCGCTGCCCAatgagctggaggagctgcacaACAGCCTCTGCAGGCCGCCCAGCCCCAACGGCACGGGCCTGCCTGGGACCGGCCCGGCGCTGCTGCACTCCGGGGACGCCCCGCTGGCCGAGAACAGAGCCTAGCTGCTGCCTGGGGCTGCTGGGAGCGGCACGTCGATATGCACTACACTCTCTGGGATTCCACCGCTAAAACTGGACTCAACCCTTGTACTAATGGGATTACTCCTAGTGTAGATCCAGCTCTCTgtattgtgttaaaatatgCAACTCTGAGGGAAGGGAAGACTTTCAGAAATCCACCCTTAACAATCAGAAAAGTAGCATTTCAGAGCACAGACGCCTTATGCAACATTCAGGCACCACATCAAAGTCTAACCTCTAAGGGCATAGGTTTAAATGAACAGAACACCACACTTCTCCTTGTTTTGGATGATTAGCGCAATAATGATTTGCTGATAATGAATTCTCTCCTTCTTTGATACCCTTTAGTGTTTCTCTCTGTGCCTCAACTGGTTGGTTTCAGTGGGGCTTGCTGTGTACAAACTGTGTAGTTGAACACGGTGAGAGTCCTCCTCCGTGCTCGGACAATCTGGTAATGCTTAACTTGCAGAAAAGCCCTGAAGTGGGCGGAGCTTCTTGGGAGTGCTTGGAATCCTGAACTCGTTAAAGCCAGGGCGATTAGAACCCAACACTAAAGCTAGAGATAGTTGCCCTGGAAACACAAATCAttatctgaagaaaaaaatataggGAGACTTAACATGTTGGCTAGTGGCCTAGACAGAAACGCACATAATACCAAAATTGCTGGTACCACAGAACGTTCCTGATCTCTGTTTTGCTAATGCCTGCATTAGTTTTATCTGCTCATCTCGGATTAACCTGcctgttgtattttaaaaaaacaaactaaagtcAGTAAGTGTGACAGTTTCGGAGCAGGGTTACACGCCATAATGAATGTTAGGGGGACGAAAAAAGCTCCCCTTTAGTGGGCAGCCATGTCTTGTGAATAAGGAATAAAATGCATCCTACTAtagtatgtataatttaaatcgCATGAACGTCCCTCATAAGAGACTTGTATAAAACTggaggatttatttttgtttaaaaagctgTCTGTAAAATAGAATTGAATTTCTTTatatacacagtgtgtgtgtgattgtgtgtaatatacatacatatatgtatgtagactgtgtatttgtaattttgttttctgggGGTTCATTGTTTTctataacaaacacaaaatacaaacttaGAATGtagaatatgaaatgtatataatgtgaagAAGTTAGATTTTCTGTTTCTAAGGTACtgacatgtaaaataatagtaacCACTACTATGTGTATAATTGTGTTGCCCACATTAAGagaaaatgtgtacatgtaATAAAAGGTTGAAAGTGGc

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K05744 LIMK2; LIM domain kinase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148240 lncRNA upstream 33594 19576964 ~ 19579031 (+) True G118304
TU148227 lncRNA upstream 132669 19479691 ~ 19479956 (+) True G118291
TU148226 lncRNA upstream 139165 19467823 ~ 19473460 (+) True G118290
TU148221 lncRNA upstream 155642 19456142 ~ 19456983 (+) True G118285
TU148164 lncRNA upstream 385192 19223374 ~ 19227433 (+) True AMCG00018732
TU148377 lncRNA downstream 357392 19994126 ~ 19994329 (+) True G118410
TU148570 lncRNA downstream 642554 20279288 ~ 20299830 (+) True G118566
TU148577 lncRNA downstream 665936 20302670 ~ 20302958 (+) True G118572
TU148612 lncRNA downstream 735485 20372219 ~ 20374812 (+) True AMCG00018781
TU148616 lncRNA downstream 740554 20377288 ~ 20381442 (+) True G118601
AMCG00018743 mRNA upstream 484 19606022 ~ 19612141 (+) True AMCG00018743
AMCG00018740 mRNA upstream 130533 19373472 ~ 19482092 (+) True AMCG00018740
AMCG00018736 mRNA upstream 266867 19332490 ~ 19345758 (+) True AMCG00018736
AMCG00018739 mRNA upstream 284746 19326479 ~ 19327879 (+) True AMCG00018739
AMCG00018735 mRNA upstream 305885 19299948 ~ 19306740 (+) True AMCG00018735
AMCG00018745 mRNA downstream 39888 19676622 ~ 19677939 (+) True AMCG00018745
AMCG00018744 mRNA downstream 42037 19678771 ~ 19684562 (+) True AMCG00018744
AMCG00018754 mRNA downstream 50850 19687584 ~ 19701791 (+) True AMCG00018754
AMCG00018751 mRNA downstream 69841 19706575 ~ 19713962 (+) True AMCG00018751
AMCG00018757 mRNA downstream 93081 19729815 ~ 19732775 (+) True AMCG00018757
TU148213 other upstream 161997 19448626 ~ 19450628 (+) False AMCG00018740
TU147936 other upstream 891282 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 1630322 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 1630511 17981210 ~ 17982114 (+) False AMCG00018681
TU147595 other upstream 2542955 17068212 ~ 17069670 (+) True G117786
TU148369 other downstream 334405 19971139 ~ 19974730 (+) True AMCG00018762
TU148559 other downstream 622643 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 737262 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 877426 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 956002 20592736 ~ 20593016 (+) True G118635

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00058716 False 3536 mRNA 0.44 16 NC_007116.7 20823409 ~ 20863374 (+)