RNA id: AMCG00018754


Basic Information

Item Value
RNA id AMCG00018754
length 1891
RNA type mRNA
GC content 0.52
exon number 12
gene id AMCG00018754
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19687584 ~ 19701791 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttttacgaacCAGGAATACAGACTGTAGTGtgaagagggagaagggggaTTGGTATTGTGATTGCATACTACATATCCATATATCTAGAGAAATATACAACGTGCATGTGAACCCGAAGCCCTCGCCGCTTCTTATCCACACAACCTTCATGGGGAATTGAGCAACGGGGAGCTCAAGGGTTTGCATTCTCGtcggtttattttatttctgtgtcgGGTATGATGATGAATGGAGGATAAATGTTGCCCAAAGCTGACAGCAGCAGTTTCgcccttctcctctctcttctcttcgcCCTGACTTTGACAGACCCTCCACGGACAGgtcCACGGCTAGCTCTGGCACGATTGTTGTCAGAGATGCGGTGCAGCCAAGGCCAGTTTGCCTGCCGCAGTGGAAAGTTGCAGTGTATCCCCCTGTCTTGGCAGTGCGACGGCTGGACGGCTTGTGAAGACAAGAGCGATGAAACGGACTGTCCTACTGTGAATAAGGATGAGCGATTCCACTACGGCAATGCCTACGACAACGTAGAGGACATCATTGGTGTGGCTCAGCCAGTGCGCTTCAACAAGAAGTGTCCCACTGGCTGGCATCACTATGAGAAGACCGCCAGTTGTTACAAGGTTTACCTGAACAACGAGAACTACTGGCAGGCGGTGGAGACATGCCAGAGAGTCAATGGCTCCCTGGCCACCTTCGTCACGAACGAGGAGCTGCAGTTCATTCTGAAGATAGAGGTGGATTTCGACGAGAAAGTGTGCGAACGGAAGGACCAATGCAAattttgGGTTGGCTACCAGTATGTCATCACTAACCAGAACCATTCTCTCGAAGGACGCTGGGAAGTTGCATATAAAGGTTCCATGCAGGTGTTTTTACCCCCTGAAGGATTAACGAGTTTTGGGGAGGCAATGCCAAATCAGGAGAATGTTTTTTGCGCACAGCTACAGCGATTCCAAATCAAAACCATGAACGAACGAGGCCTGCACAGCTGGCATGCAGAGAACTGCTACAAGAAATTCCCTTTCCTCTGTAAAAGAAGGCAGACGTGTGTGGACATCAAGGACAACGTGGTGAATGAGGGCTACTACTTCACCCCCAAGGGCGACGACCCCTGCCTGAGCTGCACGTGTCACAATGGCGAGCCGGAGATGTGCGTGGCGGCACTGTGCGAGCGACCACAAGGCTGCCAGCACTTCCGCAAGGACCCCAAGGAGTGCTGCAAGTTCACCTGCCTTGACCCAGATGGGAGCAGCCTGTTCGACTCCATGGCCAGTGGGATGCGTCTGATCGTGAGCTGCATCTCCTCCTTCCTCATCCTCTCCCTGCTGCTCTTCATGGTTCACCGGCTGCGGCAGCGGCGCAGGGAGCGCATCGAGACGCTCATTGGGGGCAACTTGCATCACTTCAACCTGGGCAGAAGGGTGCCCGGTTTTGACTACGGCCCCGATGCGTTTGGCACTGGCCTGACTCCACTACATCTGTCAGACGATGGGGAGGGAGGGGCCTTTCATTTCCATGAGCCTCCCCCTCCATATGCAGCTTTCAAGTACCCAGATATACATCACCCGGATGACCCCCCGCCACCCTATGAAGCCTCCATCAATCCAGACACTATTCTCTACGTTGATCTAGGAGAGAACATTTCTCCAACCAATGAGAACACTCAGCCACCATTAGAAACCACTAATCTCCACCAGCAGGCGAGCGAGGAGGCCTCAACGTTAGAACACTCCTCAGAGGAGCACGAAGACTCCATTGACAGCAGCACACTTTTGGTTCCCCCCGACTCACCCAGCGACGAGACCACCATGACACAGACTGCAGTTACCAGCTGCCCCAtaTATTTTTGGAACTGTAAGTCATTCAGATCGCTTAAAAATTAG

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148240 lncRNA upstream 108553 19576964 ~ 19579031 (+) True G118304
TU148227 lncRNA upstream 207628 19479691 ~ 19479956 (+) True G118291
TU148226 lncRNA upstream 214124 19467823 ~ 19473460 (+) True G118290
TU148221 lncRNA upstream 230601 19456142 ~ 19456983 (+) True G118285
TU148164 lncRNA upstream 460151 19223374 ~ 19227433 (+) True AMCG00018732
TU148377 lncRNA downstream 292335 19994126 ~ 19994329 (+) True G118410
TU148570 lncRNA downstream 577497 20279288 ~ 20299830 (+) True G118566
TU148577 lncRNA downstream 600879 20302670 ~ 20302958 (+) True G118572
TU148612 lncRNA downstream 670428 20372219 ~ 20374812 (+) True AMCG00018781
TU148616 lncRNA downstream 675497 20377288 ~ 20381442 (+) True G118601
AMCG00018744 mRNA upstream 3022 19678771 ~ 19684562 (+) True AMCG00018744
AMCG00018745 mRNA upstream 9645 19676622 ~ 19677939 (+) True AMCG00018745
AMCG00018746 mRNA upstream 50850 19612625 ~ 19636734 (+) True AMCG00018746
AMCG00018743 mRNA upstream 75443 19606022 ~ 19612141 (+) True AMCG00018743
AMCG00018740 mRNA upstream 205492 19373472 ~ 19482092 (+) True AMCG00018740
AMCG00018751 mRNA downstream 4784 19706575 ~ 19713962 (+) True AMCG00018751
AMCG00018757 mRNA downstream 28024 19729815 ~ 19732775 (+) True AMCG00018757
AMCG00018752 mRNA downstream 49823 19751614 ~ 19771954 (+) True AMCG00018752
AMCG00018753 mRNA downstream 104047 19805838 ~ 19851791 (+) True AMCG00018753
AMCG00018758 mRNA downstream 172537 19874328 ~ 19889731 (+) True AMCG00018758
TU148213 other upstream 236956 19448626 ~ 19450628 (+) False AMCG00018740
TU147936 other upstream 966241 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 1705281 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 1705470 17981210 ~ 17982114 (+) False AMCG00018681
TU147595 other upstream 2617914 17068212 ~ 17069670 (+) True G117786
TU148369 other downstream 269348 19971139 ~ 19974730 (+) True AMCG00018762
TU148559 other downstream 557586 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 672205 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 812369 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 890945 20592736 ~ 20593016 (+) True G118635

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00005576 True 6027 mRNA 0.40 11 NC_007121.7 42044220 ~ 42087230 (-)
grasscarp (Ctenopharyngodon idella) CI01000158_00694202_00704844.mRNA True 2046 mRNA 0.54 11 CI01000158 693923 ~ 704844 (-)