RNA id: AMCG00018758


Basic Information

Item Value
RNA id AMCG00018758
length 1793
RNA type mRNA
GC content 0.49
exon number 7
gene id AMCG00018758
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19874328 ~ 19889731 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCTTGCAATGGTCATCCTTTTAATATCTTTTGCTAAAATTCACACCCGGGAGTTGTCATGAAGGCCGGGGCCTCGTCTATGTGGGCTTCATGCTGTGGTCTGCTGAATGAAGTGATGGGGACAGGAGCAGTGCGAGGACAGCAACCAGGCTTTGGCACAGGAGCCGGGCCCTTCAGGTTCGCCCCCAGCGCGGGGTACTCCACCTACCCCCCGACATCCTCAGGGAACACCAGCCTGGTCTGCAAGGCCTGCGGGCTGGCCTTCTCTGTCTTCAGGAGAAAGCACATCTGCTGTGATTGCAAGAAGAACTTCTGCTCCCTGTGCTCAGTCCTGCAGGAGAACCTGCGGAGATGTGCCACGTGCCACCTGCTGAAAGGGACTGCCTTCCAGCGGCCCCAGCTCATGAGGCTGAGGGTAAAGGACCTGCGTCAGTACCTGATCCTGAGGAATATACCCACGGACACCTGCCGCGAGAAGGAGGACTTGGTGGACCTTGTTCTGTGCCACCAGGGCTCGGACACAGAGAACGAAATGGACACAAATAGTGTGCACTCCAGGTCTCTGTTCGCCACCCCGCTGTCCACTGTGCGCTCGACGTCCTCGCTGTCTGCCTCTCAGGGAGAAGAATTAGGCAGACTAGGAAGCTCGGGAACCTCGGGAAGCTCGGGAACCACAAATCCGCAGGAACAAGGTGACGGCACGTCGATCTCTCTCTTGAATCTGGAGCCAGGCGAGAGTGCAGTAGAAGAGGCAAGCCCTGTCTCTCGGAAGCGGGCGAGGGCATCCCTGTCCGACATATCCAGTGCGGAGGAGATCGAGGCCCTCTCGGTGAGGCAGCTCAAGGAGATCCTGACCCGCAACTTTGTGAACTATTCAGGGTGCTGTGAGAAGTGGGAACTGGTGGAGCGCGTGGGACGGCTATACCGGGAGAACGAGAACAACCGGAAGTCGCtGGAAAATGTGAACAACAGTATAACTGCAGACGGGGAGAAGATGCAGCTGAACAGCGACGACAACCTCTGCCGGATTTGTATGGACGCTGTGATTGACTGTGTGCTCCTGGAGTGCGGCCACATGGTCACCTGCACCAAGTGTGGGAAGAGAATGAGCGAGTGTCCCATCTGCCGGCAGTACGTGGTGCGGGCCGTGCATGTGTTCAAGTCCTAGCCGTGTCACACACCTCCATCTTAGAGTTCTTACATGGtaacttttttctctctctagtTTGGACATTATTTTATGGCCATACATTGAAAgtggctgcttttgttttgtttaataaaacacacctTTGATTTTCCAGCTCTAttgtaaattttattttattttttttggacaTAAGTTGTAGCTAATGCTGACATCCTTCACATTAGGTTGCTATTTAATTAACCACTGCCAAAGCAGATTTGGAAATATAATAAGGAAACCTGGACCAAAAACAAAGTGACTGCATATAGTGTGAAAGTGCGTAGTATTCTTAGTGCCCGCTTCAGTTAACGTCAATGTGATATTGTTTCGTAGTGCAAGTCCTTTATGCCATTCAGGACAGATGAATGCTGCACTGGAAAAGATTATCcttggatttggtgcccttagTATCCATCTTAAATCTGACCTCAGACAACACTGGGATTAATGGTCTccattaacataattaaaacacttcaataataataaattggcAAAGTGTGTgcagtaataaaaatatatatatatattttaatatgcttttcttGAACCTGCCAAATTGATCAATGTAATTTAGCAAGAAAGTAACTGTCCTTATATTTTG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K20804 RNF34; E3 ubiquitin-protein ligase RNF34

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148240 lncRNA upstream 295297 19576964 ~ 19579031 (+) True G118304
TU148227 lncRNA upstream 394372 19479691 ~ 19479956 (+) True G118291
TU148226 lncRNA upstream 400868 19467823 ~ 19473460 (+) True G118290
TU148221 lncRNA upstream 417345 19456142 ~ 19456983 (+) True G118285
TU148164 lncRNA upstream 646895 19223374 ~ 19227433 (+) True AMCG00018732
TU148377 lncRNA downstream 104395 19994126 ~ 19994329 (+) True G118410
TU148570 lncRNA downstream 389557 20279288 ~ 20299830 (+) True G118566
TU148577 lncRNA downstream 412939 20302670 ~ 20302958 (+) True G118572
TU148612 lncRNA downstream 482488 20372219 ~ 20374812 (+) True AMCG00018781
TU148616 lncRNA downstream 487557 20377288 ~ 20381442 (+) True G118601
AMCG00018753 mRNA upstream 22537 19805838 ~ 19851791 (+) True AMCG00018753
AMCG00018752 mRNA upstream 102374 19751614 ~ 19771954 (+) True AMCG00018752
AMCG00018757 mRNA upstream 141553 19729815 ~ 19732775 (+) True AMCG00018757
AMCG00018751 mRNA upstream 160366 19706575 ~ 19713962 (+) True AMCG00018751
AMCG00018754 mRNA upstream 172537 19687584 ~ 19701791 (+) True AMCG00018754
AMCG00018759 mRNA downstream 70007 19959738 ~ 19966779 (+) True AMCG00018759
AMCG00018762 mRNA downstream 83847 19973578 ~ 19974366 (+) False AMCG00018762
AMCG00018764 mRNA downstream 137221 20026952 ~ 20035662 (+) True AMCG00018764
AMCG00018763 mRNA downstream 168107 20057838 ~ 20083148 (+) True AMCG00018763
AMCG00018768 mRNA downstream 205394 20095125 ~ 20097742 (+) True AMCG00018768
TU148213 other upstream 423700 19448626 ~ 19450628 (+) False AMCG00018740
TU147936 other upstream 1152985 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 1892025 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 1892214 17981210 ~ 17982114 (+) False AMCG00018681
TU147595 other upstream 2804658 17068212 ~ 17069670 (+) True G117786
TU148369 other downstream 81408 19971139 ~ 19974730 (+) True AMCG00018762
TU148559 other downstream 369646 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 484265 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 624429 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 703005 20592736 ~ 20593016 (+) True G118635

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00004539 True 1377 mRNA 0.60 8 NC_007121.7 41765944 ~ 41817109 (+)