RNA id: AMCG00018759


Basic Information

Item Value
RNA id AMCG00018759
length 687
RNA type mRNA
GC content 0.56
exon number 2
gene id AMCG00018759
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 19959738 ~ 19966779 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTCTGAACGAGCACTCGCTGCAGGCGCTGTCCTGGAGGAAGCTGTATCTCAGCAGAGCCAAGCTGAAGGCTTCGAGCAGGACGTCAGCTCTTCTCTCGGGTTTCGCAATGGTGGCTATGGTGGAGGTCCAGCTGGAGCCAACCCATGAATACCCCCCCGGCCTGCTGATTGCCTTCAGTGCCTGCACCACCGTGCTGGTAGCGGTCCACCTCTTCGCCCTGATGATCAGCACCTGCATCCTGCCCAACATCGAGGCAGTGAGCAATGTGCACAACCTCAACTCTGTCAACGAATCGCCACACGAGCGCATGCACCGGCACATCGAGCTGGCCTGGGCCTTCTCCACCGTCATTGGAACTCTGCTGTTCCTGGCCGAGGTGGTGTTGCTGTGCTGGGTCAAGTTTCTCCCAGTCAAGAGACACCCCGTCTCCCCGGCCAATCCAAACATCACAGAGTCCATCAGCCCGGGGCAAGCGGCTGCCATCGCCTCCACATCCATCATGGTGCCCTTTGGCTTGATATTCATTGTTTTCGCGGTGCATTTCTACAGATCACTGGTCAGCCACAAAACAGACCGGCAGTTCCAGGAACTGGAGGAACTTTCCAATTTCGCCAGACTCCAGAATCAATTGGACAATAGAGGAGATGTTACAATGCAGTCTCCAAGCTCTCATTTTccatag

Function

GO: NA

KEGG:

id description
K16056 ORAI1; calcium release-activated calcium channel protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148240 lncRNA upstream 380707 19576964 ~ 19579031 (+) True G118304
TU148227 lncRNA upstream 479782 19479691 ~ 19479956 (+) True G118291
TU148226 lncRNA upstream 486278 19467823 ~ 19473460 (+) True G118290
TU148221 lncRNA upstream 502755 19456142 ~ 19456983 (+) True G118285
TU148164 lncRNA upstream 732305 19223374 ~ 19227433 (+) True AMCG00018732
TU148377 lncRNA downstream 27347 19994126 ~ 19994329 (+) True G118410
TU148570 lncRNA downstream 312509 20279288 ~ 20299830 (+) True G118566
TU148577 lncRNA downstream 335891 20302670 ~ 20302958 (+) True G118572
TU148612 lncRNA downstream 405440 20372219 ~ 20374812 (+) True AMCG00018781
TU148616 lncRNA downstream 410509 20377288 ~ 20381442 (+) True G118601
AMCG00018758 mRNA upstream 70007 19874328 ~ 19889731 (+) True AMCG00018758
AMCG00018753 mRNA upstream 107947 19805838 ~ 19851791 (+) True AMCG00018753
AMCG00018752 mRNA upstream 187784 19751614 ~ 19771954 (+) True AMCG00018752
AMCG00018757 mRNA upstream 226963 19729815 ~ 19732775 (+) True AMCG00018757
AMCG00018751 mRNA upstream 245776 19706575 ~ 19713962 (+) True AMCG00018751
AMCG00018762 mRNA downstream 6799 19973578 ~ 19974366 (+) False AMCG00018762
AMCG00018764 mRNA downstream 60173 20026952 ~ 20035662 (+) True AMCG00018764
AMCG00018763 mRNA downstream 91059 20057838 ~ 20083148 (+) True AMCG00018763
AMCG00018768 mRNA downstream 128346 20095125 ~ 20097742 (+) True AMCG00018768
AMCG00018769 mRNA downstream 132284 20099063 ~ 20111187 (+) True AMCG00018769
TU148213 other upstream 509110 19448626 ~ 19450628 (+) False AMCG00018740
TU147936 other upstream 1238395 18719206 ~ 18721343 (+) True AMCG00018702
TU147849 other upstream 1977435 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 1977624 17981210 ~ 17982114 (+) False AMCG00018681
TU147595 other upstream 2890068 17068212 ~ 17069670 (+) True G117786
TU148369 other downstream 4360 19971139 ~ 19974730 (+) True AMCG00018762
TU148559 other downstream 292598 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 407217 20373996 ~ 20374812 (+) False AMCG00018781
TU148644 other downstream 547381 20514160 ~ 20514491 (+) True G118623
TU148656 other downstream 625957 20592736 ~ 20593016 (+) True G118635

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00004541 True 1299 mRNA 0.48 2 NC_007121.7 41914084 ~ 41921417 (+)
grasscarp (Ctenopharyngodon idella) CI01000053_05593016_05597420.mRNA True 737 mRNA 0.50 2 CI01000053 5593016 ~ 5597488 (+)
rainbow trout (Oncorhynchus mykiss) TU553786 True 821 TUCP 0.52 2 NC_048570.1 23911821 ~ 23914250 (+)