RNA id: AMCG00018801


Basic Information

Item Value
RNA id AMCG00018801
length 4971
RNA type mRNA
GC content 0.44
exon number 20
gene id AMCG00018801
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 20706497 ~ 20723114 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCAGCATAGAGACGGTCTCGAACTGGAAACGACGTGGAAGGAATCTGTCATAAAACACCGAGGAACCTGATCTATCCCTGTACTGTGTGCTCATATAATGAGCTGTAATCGAGGATGTAGTTACTTCATGTGTCTTAACATCACCTTTCGATTTTGTGGCTGTCATtgttaaatttgaataaatcaaCACTCGACGCTTCATCCATTGTTACATCCAggatttcagattatttttttactgaactTCAACAACGACTTCGTTTTTAATTCCGCTGCGAATTTGCGCAACAATCTTATACAAGACGAAGAAACAACACACCATCCTGTTGTTACACGACCAATGCGGTCACGTTACTAATTTTGAATGAAAAAGCTAACCTGGTACTAGTCTTGTATGTTCCTGGAAAGCCCTAAGGATCTACGTGTCACAGTTTAATGATTGACAGGAGCGCCGGAGGAATTGACTTCTAAAGGTCCTACTTGAAGAGTCACCTGGATGTGAATCAGTGTCCTCACCCCGGGGTGAAGATGGGCTCGTTGTTCAGGAGCGAGGAGATGTGCTTGGCCCAGCTGTTCCTGCAGTCCGGGTCTGCGTATGACTGCATCAGCGAGCTGGGGGAGATGGGGCTGGTCGAGTTCAGGGATCTCAACCCCAATGTGAACTCCTTCCAACGCAAGTTTGTCGGTGAGATAAAGAGGTGTGAGGAGATGGAGAGGATTCTTGGCTACCTGCTGAGAGAAATTAAGAAAGCAGACATTCCTCTTCCCGAAGGGGAGGTGAACCCAGTTGCGCCTCTGCCCAAACACGTCTTGGTCATCATGGAGCAGTTGCAGAAGCTGGAGGTAGAGTTAAGCGAAGTGACCAAAAACAAGGAGAAACTAAAGAAAAATCTCTTGGAGTTGACTGAATACACCCACATGCTGAGAATTACCAGGAACTTTGTCCAGAGAAGCACAGAGcaGGAGCCTCTTCAGCCACAGTATGAAGAATTCCCTTTCCTGGAGAAAGAATCCTTAATGGACTATAACAACATGCAGCGCCTGGGAGCCAAGCTTGGGTTCATCTCAGGCTTAATACACAGAGTTAAGATTGAAGCCTTCGAAAGAATGCTGTGGAGGGTGTGTAAGGGATACACCATTCTAAGCTACGCGGAGATCGATGAAAACATTGAGGATCCTGATACCggagaaataacaaaaagtgTGGTATTCTTAATTTCATACTGGGGCGAACAGATTGGTCAGAAGGTAAAGAAGATATGTGATTGTTATCACTGTCACATCTACCCATATCCCAGCAACAACGAGGAGCGGAAAGATGTCGTTGAAGGACTCCGGACTCGAATTCAAGATCTGCACACTGTGTTGCACAGGACAGAAGATTACCTGAGACAGGTGCTAAGTAAAGCTTCTGAGTCCATTTATACATGGGTGATCCAGGTCAAAAAGATGAAGGCCATTTACCACATACTGAATCTGTGCAGCTTCGATGTGACCAACAAGTGTCTGATCGCGGAGGTGTGGTGCCCAGTGAACGACCTGACCACGCTGCGCCGAGCTTTGGAGGAGGGATCGaggAAGAATGGAGCCACTGTGCCATCTTTTGTGAATCGAATACCGAGCACAGAGACCCCCCCGACGCTCATCAGAACGAACAAATTCACGTCGGGCTTCCAGAACATTGTGGAAGCCTATGGAGTTGGCAACTACAGAGAAGTCAATCCAGCTCCCTACACCATTGTCACGTTTCCCTTTGTGTTCGCTGTGATGTTCGGAGACTTGGGCCACGGCATCATAATGGCTCTCTTCTCATTGTGGATGGTCTTATTTGAAAACAACCCCAAACTCAAGAGAACAAGAAACGAGATATGGAACACTTTCTTTGAGGGTCGATACATAATCTTAATGATGGGCATCTTCTCTGTGTACACGGGACTCATCTACAATGACTGCTTTTCCAAGTCTGTAAATATCTTTGGCTCTGCGTGGAATGTGAATGCGATGTTCAAAGCAGGACAATGGAAtgccAGCGATCTCCATTCAAATGCCTTGCTAACCCTTGATCCCAATGTAACTGGTGTCTTCAATGGACCATACCCATTTGGCATAGACCCTATTTGGAATTTGGCGACTAATCGCCTCAGTTTCTTAAACTCCTACAAGATGAAGATGTCTGTCATCCTGGGGGTTGTTCACATGACCTTTGGAGTCATTCTGGGTGTCTTCAATTACCTGCACTTCAGAAAGAAGTTCAACATCTACCTGGTGTTTTTACCCGAGCTGCTCTTTCTGCTCTGTCTCTTCGGCTACCTGGTGTTCATGATCATCTTTAAATGGCTGGCTTTCTCAGCAGAGAACTCCCGACTCGCTCCCAGCATCCTCATCCACTTCATTAACATGTTCCTCTTCCAGGGGAATGAGGGCATGCAACCCCTCTATCCTGGCCAGACAGGGCTGCAGGTGTTCCTCGTGGTGATCGCTGTCCTCTCGGTGCCCGTGCTGCTGCTAGGGAAACCTCTTTACCTGTACTGGCTGCACCATGGAGGGAAGAGCCTGGGCATGTACAGAAAGGGGTACGAACTGGTGCGCCGGGGTAGTGAGGAGGAGCTGTCTCTGCTCAGAGCTCATGACATGGAAGAGGGGGGGAGCCACACAGATCACACAGCCAGCAGGGAGGCCCAGTCTGAGGAGtttGATTTTGCAGACGTTTTCTTGCACCAGTCCATCCACACCATCGAGTACTGCCTGGGCTGCATCTCCAACACTGCTTCCTACCTGCGCCTCTGGGCCCTCAGCCTCGCCCACGCCCAGTTGTCTGAGGTCCTGTGGGCGATGGTGATGAGAGTGGGGCTGCGCGTGGACAACAAGTTTGGGATTGTCTTCCTGGTGCCAGTGTTTGGGCTCTTCGCCGTCCTCACCGTGTCCATCCTGCTCATCATGGAGGGGCTCTCCGCCTTCCTGCACGCCCTGCGGCTGCACTGGGTGGAATTTCAGAACAAGTTCTACACTGGCGCTGGAATCAAGTTCATCCCTTTCTCCTTCTCACTCATCTCCTCTGGTTTCGAATACGAGGGCTTCATGTGAAAAGGCTGCTCAGAGCTAAAGAACTGGGAGAAACCCTGTGTGACGGGGATTGTATGATCTTGAACCTCATAGctgtccattttttttctttttttgtatatttggttttgtacttaaatgttttttttgcacTGACTGCCTTACATAAAGCAAccaaatataaacatatcaTGTTTGATTGTAAATGTCCAGATACAACCTTAGAATCTGTATAGTGTTTCAACACACATTTGcttaaatgttttggtttccaCCGTTAATTGTGAAGAGGTgcttaactgtatattttattaattctggTTGTCAGCGGagaaggggttgggggggtgtaAGCTATTTGCATAAAGGGTTACTGTGAAGTATTTGATACAATGTGTGCATCCCAGCAACCACTGACAGTCTGcttgttttaaaactgaaaatattaatatatattttttgattcaCAAAAGcccagaaatgtaatttatatagtCTAGgaataaatggtttattattCTAAAAATCTGTCTTTCTTACAAGTTAATTGGTGATTACTGACAGATGGCATTCATAGAGTGGTACAGGACCTCTTTTCCCagatatatttgaatgtaaatactgtattgtattagaTTCTGTATGTAGATGTTGGAATAGTGTCATATGTTGCTGTAGCCACTTTTTCTGAAATCTTTCTGGCACTTTGCAGTATTTGAATGCTACAACAGAAGCACAGATGAAGCTTCCCTAGGAAATCATGTTCTGAAAACATGAGAGAGCTGCTTGTTACATGTCAATCCAATGTCAAGGCCAATATCAAGTTAATAAGTACTACCACTAATTTTGTCAGGAATTCTAAATGAACATATTCCCTAGTGGGAAAAGCATGTCACAAGTGGAGAGAAATAACATAGAATGGTGCAATTGCATGACCATGCTGTGGATTACAAGACTCTGGCTAAACCTATTGAGCAATGCAGATCCAGCTGACATTTTCAGAACCCTGAAAGGGACTGGCAGATTGAACCCAGTCCTTTAGCTGAAACTCAACATCAGGACCAGCGGACTACACAAACTGCAGCCCATTTCAGAACTGAGAAAGTGAGACACCTTTTTACACAAGGGGTTGTGGGTGTCTCTTGCCAACTGCTACGTGGTGTTGTGTAACTTTCTATAAAGGCTCATTCCAGAGTCTTCGTGGTTTTCTTGCATCACTAACCTGCTTACAAACTGCTAACAAACATCTTGTGCAGGAAGATGTGTTCTTTctaatctttgttttttgttcttatatGGTTGAGTTAACACCAGAATCCTTATGCTTCTAGCTTTTGCGCAACTTCttttattcacttttatttattttaacaaaggaatattttattaaacattaccTTCCTTGAGTAATGTACTGTGCTGAAGattgcaaatgcaaaatatttttacaaacaaaatgccTAGCTGAAgtctagtttattttttcaccccCAGAAAAAGTTGAGTTGGCTGAAGTGCTTCTAGGTATAAAGAAATGTCTTGTTTTATCCTGTTCTAATACATTGTGCCCAATTTAAGCAGTTGTAAGTTCTGGCACACTCCAATGACCTCCCCCCcaacaaatgtgtaatttaagtttttcattCAGCCCATCTTTTCAACTGccatttcaaaaagcaaataaagtcttaataatttgaaatggaaGTGCAAACGTCTcattgtttcaattaaatagCTGCTTTCGTGTGTTTGGGTTTTAGGACATCACAGAACTAAAACGGATGCATGTTCTGGAcccttacaaaaacaaatcctggtGTCCTGCAGGAATTGCGCCGATGTCCTGTAGTTATTCTTGGTGTCCTGCAGGAGTTCTACTCGAGTCCTgaaagaaattacaaaaaa

Function

GO: NA

KEGG:

id description
K02154 ATPeV0A, ATP6N; V-type H+-transporting ATPase subunit a

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU148752 lncRNA upstream 18853 20684865 ~ 20687644 (+) False AMCG00018800
TU148666 lncRNA upstream 85950 20607648 ~ 20620547 (+) True G118644
TU148668 lncRNA upstream 100400 20604704 ~ 20606097 (+) True G118645
TU148662 lncRNA upstream 106141 20599791 ~ 20600356 (+) True G118641
TU148661 lncRNA upstream 108379 20597875 ~ 20598118 (+) True G118640
TU148823 lncRNA downstream 199254 20922368 ~ 20931404 (+) True G118771
TU148961 lncRNA downstream 647796 21370910 ~ 21422770 (+) True G118863
TU149002 lncRNA downstream 958206 21681320 ~ 21681723 (+) True G118885
TU149036 lncRNA downstream 1125301 21848415 ~ 21853057 (+) False AMCG00018820
TU149148 lncRNA downstream 1824158 22547272 ~ 22547691 (+) True G118999
AMCG00018803 mRNA upstream 544 20698222 ~ 20705953 (+) True AMCG00018803
AMCG00018804 mRNA upstream 8605 20695682 ~ 20697892 (+) True AMCG00018804
AMCG00018800 mRNA upstream 11303 20679280 ~ 20695194 (+) True AMCG00018800
AMCG00018799 mRNA upstream 27676 20670836 ~ 20678821 (+) True AMCG00018799
AMCG00018791 mRNA upstream 61256 20642329 ~ 20645241 (+) True AMCG00018791
AMCG00018802 mRNA downstream 496 20723610 ~ 20772586 (+) True AMCG00018802
AMCG00018806 mRNA downstream 173800 20896914 ~ 20912077 (+) True AMCG00018806
AMCG00018823 mRNA downstream 968197 21691311 ~ 21692108 (+) True AMCG00018823
AMCG00018821 mRNA downstream 992736 21715850 ~ 21743739 (+) True AMCG00018821
AMCG00018820 mRNA downstream 1125256 21848370 ~ 21897700 (+) True AMCG00018820
TU148663 other upstream 103182 20601956 ~ 20603315 (+) True AMCG00018792
TU148657 other upstream 112358 20593366 ~ 20594139 (+) True G118636
TU148656 other upstream 113481 20592736 ~ 20593016 (+) True G118635
TU148644 other upstream 192006 20514160 ~ 20514491 (+) True G118623
TU148611 other upstream 331685 20373996 ~ 20374812 (+) False AMCG00018781
TU148789 other downstream 32515 20755629 ~ 20756220 (+) False AMCG00018802
TU148883 other downstream 464842 21187956 ~ 21189246 (+) True G118815
TU149795 other downstream 4510968 25234082 ~ 25267781 (+) True G119507
TU149874 other downstream 4761183 25484297 ~ 25485446 (+) False AMCG00018913
TU150090 other downstream 5737506 26460620 ~ 26461227 (+) True G119762

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000049_07735779_07751747.mRNA True 2616 mRNA 0.49 20 CI01000049 7735779 ~ 7751747 (+)