RNA id: TU145016



Basic Information


Item Value
RNA id TU145016
length 1236
RNA type TUCP
GC content 0.45
exon number 2
gene id G115789
representative True

Chromosome Information


Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8693364 ~ 8694719 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AATAATTTACGATCGACTACTGCACATTAAAGTATATTTCTTGCACAAGCACATTCCAATCTAACAAGTTAGAGGGAGTCCATGCTtctgcaatataaaatacattttacaacttggATTTTACAGAACAGGAAACTAACAAATAGTTAAATGgacaacatttatttgcatCTTTCAATGGatagcttttttttctccttaaccctgctgtggtaccatggggtctctgtgaccccaccccaatggtaCTGTCAATGTCACTTTTTTCATGGTTCCAGAGCAGGGTTAAACAAGTAGAAATGTTAGTCAAATCCTGAATCAAAGCTGGTACTGCCTAGTGAGAGATGGTATCAGCTCTGCCTATGAAGGTTTCTAACTGCACAACCTTCCCagccacagttaacagtgcattaGTAGACCGGTACATAACTCTTATCTAAACACCTTCCTAGAGCAGAGCACATTTTCAGTTGCTATAGGAACTCAAACTAGTcatgtacaaaaacaagaatacatCAGGCTTAACTGTTACTAAAACATTACCGTATCGTTTATGCAAGAATGAAGAATCTTGGATATATAAAAGGGTTTATTTCTTTCGAGTCCTGCATATTTCAGGTGCCGTCCCCTGCTTTACAATTTCTAAAGCACACGGCCCTGCTCTCCTGTGCTTTGCCTGTCAAATCATCATGTTGCTAAATGCAAGAGGGGAGGTTGCTTGTGTACAgaggtttgcattttttaaaacctcCTTCCTCAGCCCTTATCCCAGCTGGGTTAGGAGTTCATGGGAAGCCTGTCGGTAATATTAACACGACTGGGGGATTTTTCTCTTCAGTCTCTGCGCAGGAGTTTTGGGTGCTTTCTTGGCGGACTTGGCCAGTGTGGTTTTTGCCAGGGCTCCCTTCTTTTTCCTCGCGGGTGTCTTGACAGTTGTTGCCTCCTCTGCCAGAGCTTTCTTTGGAGTCTTCACGGTTTTCGCTTTCTTGCCTGGTGTCCTCAGCACCCTGCCCTCCTTGGGGGTCTCGGGAGGGGCCCCTGCAGACAACCGGGCACTCTTATTTCTAACTGGAGTCTTTGGTGCACTCTCAAATGCTTTCTTTGCTGGGGTCTGAAGCTTGGCCTTCTTGGAGGGCGTTTGTATAGTAACCAACTGTGGAACCTCCTCCACTTCCTGTCCAGGCTCTGCCTTTGCAACCTTTCCCTTTTTGCCCTTCTGCTTGCCTACCTTCTTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU144883 lncRNA upstream 320537 8352077 ~ 8372827 (+) True G115678
TU144888 lncRNA upstream 345528 8294416 ~ 8347836 (+) False G115679
TU144889 lncRNA upstream 345528 8294416 ~ 8347836 (+) False G115679
TU144892 lncRNA upstream 345528 8343130 ~ 8347836 (+) True G115679
TU144843 lncRNA upstream 598915 8094200 ~ 8094449 (+) True G115640
TU145024 lncRNA downstream 8438 8703157 ~ 8704903 (+) True G115796
TU145109 lncRNA downstream 167362 8862081 ~ 8862511 (+) True G115873
TU145111 lncRNA downstream 173823 8868542 ~ 8870342 (+) True G115875
TU145137 lncRNA downstream 341611 9036330 ~ 9036583 (+) True G115896
TU145180 lncRNA downstream 504158 9198877 ~ 9199440 (+) True G115931
AMCG00018338 mRNA upstream 26705 8650411 ~ 8666659 (+) True AMCG00018338
AMCG00018337 mRNA upstream 47256 8643855 ~ 8646108 (+) True AMCG00018337
AMCG00018335 mRNA upstream 69710 8604721 ~ 8623654 (+) True AMCG00018335
AMCG00018336 mRNA upstream 100643 8553588 ~ 8592721 (+) True AMCG00018336
AMCG00018333 mRNA upstream 150249 8541991 ~ 8543115 (+) True AMCG00018333
AMCG00018345 mRNA downstream 24021 8718740 ~ 8731928 (+) True AMCG00018345
AMCG00018349 mRNA downstream 88910 8783629 ~ 8810474 (+) True AMCG00018349
AMCG00018348 mRNA downstream 118300 8813019 ~ 8847184 (+) True AMCG00018348
AMCG00018350 mRNA downstream 237371 8932090 ~ 8937602 (+) True AMCG00018350
AMCG00018351 mRNA downstream 242896 8937615 ~ 8941636 (+) True AMCG00018351
TU144853 other upstream 571193 8119778 ~ 8122171 (+) True G115648
TU144781 other upstream 798915 7893627 ~ 7894449 (+) True G115590
TU144414 other upstream 2742347 5949463 ~ 5951017 (+) True G115299
TU144084 other upstream 3929459 4761518 ~ 4763905 (+) True G115049
TU144009 other upstream 4089375 4601490 ~ 4603989 (+) False AMCG00018216
TU145182 other downstream 504938 9199657 ~ 9201586 (+) False AMCG00018358
TU145192 other downstream 545092 9239811 ~ 9241815 (+) True AMCG00018360
TU145295 other downstream 867442 9562161 ~ 9564404 (+) False AMCG00018372
TU145312 other downstream 914358 9609077 ~ 9612918 (+) False AMCG00018380
TU146017 other downstream 3271528 11966247 ~ 11970778 (+) True G116585

Expression Profile