RNA id: TU145111


Basic Information

Item Value
RNA id TU145111
length 1769
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G115875
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 8868542 ~ 8870342 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCTTGTTTAcccctttattttaattttataaaaccTTCTGTACCACCCCTACCCCCTTCCAACCAATCCACAGCACCCTTAAAACATAGGGGAAGAGGaagaatgtatataaaatgttacagattataataatagtaatgacaACAATTATATAGTAAGATAAAATGTACTACTTAgctaaatagaaaaatattttatatttcatggaTCCCAAGGTAAATAGCAATACATCAATTTGGAAGAATCAGCTCTAGGTCCAacacatttgtaatgattttccaatatgttttggttttgtaccTCAAAATTGTCTCTAAGCTGAACTTTTCAAGTGATGAATCCTTCAGTTCCATTACACTGCTTCTGCAAAACCTCAGCCAAAACACAATTCTCTCTATAGGTGTTTGGGTTAAACTTGACTCTGtgtgtaaacaaatacatacattttttaaaagccacCATGAAGTCCCAGCAAATCATatctaaataaacatgtatttgaaaacCAGAGAACCAAACTCATAAAATACTCCCTCAATAGAACCGATTCTTCAGGGTAGACTCAGCTGAACATATTTGACCTGGAATGACTAACGGTTTTCTTTACAAATTTAAGGACCAGTATGCCCTAAAATTGTGTCTGATGGGTGACAAATATAACACAGAGCACTTACACATTCTGTAGAGATGGTGAGATTAGCACAGCATAATTCATCGCGTGTTGGGCTGCTACTTAAGTACAGAGTGTCACTGCACTTAACAACCTTGATAAACTACCacaaagttaattgtttttgctGTAACACTTTTGAATGAAGAGACCTGTGAAGAGgaacagaataatacatttttctgtgtaaTGAGGTCAGTGCAGTGATTTCACAGTCCAGCACCTAGCTGCCGCCTTGTCCCGGCCATTTTTGCTCTGTTTTTGATCCGTTTCCATAGCAACTCACTCTTCTCCTGTTCCGCCAATTGGCATCTGTGGACAGAAAcgggaaaaaaagaaacctagCTAACCTAATCAGACTGTCCTTCCTCCTATTGGCAGCACCCGAAtggctatttattttgatgatttAATTTATCTCAACACAGCCAAAGTGGAGACTCTCTCCATTTCAAAGATGACCAGGCTGAATAGACATTTTCAGGCATCTGCAAAAGCAGAGGGATTCAGCAGTAGTTGGTTTACCGAACAAACACCCACTTCAGCAGAGTACCAAGGAGGACAATGCACTCTGGGAGATAACTGAAACTACACAAACTGTGAGTGCCAATGGTCTGAACAGTGATGCGCATGCGATATGTATTATGGGTTACCTTGGGTGGTTCCTGAGAAGTCTAGCTTACTGATTTAAAGTCATGAGAAGGCTGTTGGTGCCCAAGGTGGCAGGAGGCTTGGTGGCTGCTTCTACCCAATCACAGGCTTGGAGACTGTGGAGGTGCAAGGTCAGGCCAAGAGCTTCTGCAGATCTGGCTCAAGACCATCCGCAATGAGCTGCTCCAGGCTGTAGTAGTGATGGACCACCTTCTCCTCGGTCACCACCACTACTCTCAGGCCATGGGGGTCCGTCCCCAACTGGCAGCCAATCGCAGAAGTCACCACCATGTCCAAGCCGTCGTTAACTGCCCCGGCATTGCGGTGGTAGTGTCCAGAGAAGACGGCTTTCACTCCTGGACCAAGGAGAGGGAAAGACCAGGTTAGGTGGGTGGAACACAAACCAGAGATCCTCTTCAAAACAGATCAGTACTTGGGCTTAATAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145109 lncRNA upstream 6031 8862081 ~ 8862511 (+) True G115873
TU145024 lncRNA upstream 163639 8703157 ~ 8704903 (+) True G115796
TU144883 lncRNA upstream 495715 8352077 ~ 8372827 (+) True G115678
TU144888 lncRNA upstream 520706 8294416 ~ 8347836 (+) False G115679
TU145137 lncRNA downstream 165988 9036330 ~ 9036583 (+) True G115896
TU145180 lncRNA downstream 328535 9198877 ~ 9199440 (+) True G115931
TU145190 lncRNA downstream 357668 9228010 ~ 9230141 (+) True G115939
TU145254 lncRNA downstream 566690 9437032 ~ 9437303 (+) True G115990
TU145252 lncRNA downstream 575268 9445610 ~ 9447020 (+) False AMCG00018368
AMCG00018348 mRNA upstream 21358 8813019 ~ 8847184 (+) True AMCG00018348
AMCG00018349 mRNA upstream 58068 8783629 ~ 8810474 (+) True AMCG00018349
AMCG00018345 mRNA upstream 136614 8718740 ~ 8731928 (+) True AMCG00018345
AMCG00018338 mRNA upstream 201883 8650411 ~ 8666659 (+) True AMCG00018338
AMCG00018337 mRNA upstream 222434 8643855 ~ 8646108 (+) True AMCG00018337
AMCG00018350 mRNA downstream 61748 8932090 ~ 8937602 (+) True AMCG00018350
AMCG00018351 mRNA downstream 67273 8937615 ~ 8941636 (+) True AMCG00018351
AMCG00018354 mRNA downstream 149661 9020003 ~ 9021898 (+) True AMCG00018354
AMCG00018356 mRNA downstream 253971 9124313 ~ 9130120 (+) True AMCG00018356
AMCG00018357 mRNA downstream 285839 9156181 ~ 9156453 (+) True AMCG00018357
TU145016 other upstream 173823 8693364 ~ 8694719 (+) True G115789
TU144853 other upstream 746371 8119778 ~ 8122171 (+) True G115648
TU144781 other upstream 974093 7893627 ~ 7894449 (+) True G115590
TU144414 other upstream 2917525 5949463 ~ 5951017 (+) True G115299
TU144084 other upstream 4104637 4761518 ~ 4763905 (+) True G115049
TU145182 other downstream 329315 9199657 ~ 9201586 (+) False AMCG00018358
TU145192 other downstream 369469 9239811 ~ 9241815 (+) True AMCG00018360
TU145295 other downstream 691819 9562161 ~ 9564404 (+) False AMCG00018372
TU145312 other downstream 738735 9609077 ~ 9612918 (+) False AMCG00018380
TU146017 other downstream 3095905 11966247 ~ 11970778 (+) True G116585

Expression Profile