RNA id: TU145137


Basic Information

Item Value
RNA id TU145137
length 254
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G115896
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 9036330 ~ 9036583 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccgtctcatcaggagcatgcccagacattgtcgggagtgcatacaggcacgtgggggccatacacactactgagtcacattatgagttgccgtgatgaaattcacacaagttggaacagcctgtgatttcaattgtttactttgattttcggtgtgagtttgaatccagccctcaatcggttggtgattttggtttccattgaccgttgttacgtcattttgttctcaacgaattacacaatgtacagtaaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145111 lncRNA upstream 165988 8868542 ~ 8870342 (+) True G115875
TU145109 lncRNA upstream 173819 8862081 ~ 8862511 (+) True G115873
TU145024 lncRNA upstream 331427 8703157 ~ 8704903 (+) True G115796
TU144883 lncRNA upstream 663503 8352077 ~ 8372827 (+) True G115678
TU144889 lncRNA upstream 688494 8294416 ~ 8347836 (+) False G115679
TU145180 lncRNA downstream 162294 9198877 ~ 9199440 (+) True G115931
TU145190 lncRNA downstream 191427 9228010 ~ 9230141 (+) True G115939
TU145254 lncRNA downstream 400449 9437032 ~ 9437303 (+) True G115990
TU145252 lncRNA downstream 409027 9445610 ~ 9447020 (+) False AMCG00018368
TU145266 lncRNA downstream 435914 9472497 ~ 9477108 (+) True G116002
AMCG00018354 mRNA upstream 14432 9020003 ~ 9021898 (+) True AMCG00018354
AMCG00018351 mRNA upstream 94694 8937615 ~ 8941636 (+) True AMCG00018351
AMCG00018350 mRNA upstream 98728 8932090 ~ 8937602 (+) True AMCG00018350
AMCG00018348 mRNA upstream 189146 8813019 ~ 8847184 (+) True AMCG00018348
AMCG00018349 mRNA upstream 225856 8783629 ~ 8810474 (+) True AMCG00018349
AMCG00018356 mRNA downstream 87730 9124313 ~ 9130120 (+) True AMCG00018356
AMCG00018357 mRNA downstream 119598 9156181 ~ 9156453 (+) True AMCG00018357
AMCG00018355 mRNA downstream 125903 9162486 ~ 9187759 (+) True AMCG00018355
AMCG00018358 mRNA downstream 163129 9199712 ~ 9206776 (+) True AMCG00018358
AMCG00018360 mRNA downstream 204779 9241362 ~ 9245234 (+) False AMCG00018360
TU145016 other upstream 341611 8693364 ~ 8694719 (+) True G115789
TU144853 other upstream 914159 8119778 ~ 8122171 (+) True G115648
TU144781 other upstream 1141881 7893627 ~ 7894449 (+) True G115590
TU144414 other upstream 3085313 5949463 ~ 5951017 (+) True G115299
TU144084 other upstream 4272425 4761518 ~ 4763905 (+) True G115049
TU145182 other downstream 163074 9199657 ~ 9201586 (+) False AMCG00018358
TU145192 other downstream 203228 9239811 ~ 9241815 (+) True AMCG00018360
TU145295 other downstream 525578 9562161 ~ 9564404 (+) False AMCG00018372
TU145312 other downstream 572494 9609077 ~ 9612918 (+) False AMCG00018380
TU146017 other downstream 2929664 11966247 ~ 11970778 (+) True G116585

Expression Profile