RNA id: TU146048


Basic Information

Item Value
RNA id TU146048
length 250
lncRNA type inter_gene
GC content 0.61
exon number 1
gene id G116601
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12126450 ~ 12126699 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctTTCTCCAGTGTGCTCAGGGGACTCACCTGGGTGTGTAGACCGTGTTCAGATGGGTTCTGCTGCCCTGACAGGTGGAGCTGAGGGAGATCGAGTCATCATGGTAGCAGCAGGTGCGGTCAAGGGCTCGCAGGTGCAGCAGTTCATCTGAGCGGCTGAAGGCCGGGTTATCCAGGGAGTCCACAGAGGAACCGGGCCACGACTGGGTCCAGAACCGGCCTGAGAGATCGTCAAAGCGGCTGAACCGACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145974 lncRNA upstream 308361 11728809 ~ 11818089 (+) True G116546
TU145884 lncRNA upstream 710712 11415481 ~ 11415738 (+) True G116479
TU145882 lncRNA upstream 714380 11410805 ~ 11412070 (+) True G116477
TU145839 lncRNA upstream 870285 11252419 ~ 11256165 (+) False AMCG00018449
TU145840 lncRNA upstream 870285 11252419 ~ 11256165 (+) True AMCG00018449
TU146052 lncRNA downstream 12303 12139002 ~ 12140081 (+) False G116603
TU146053 lncRNA downstream 12303 12139002 ~ 12142135 (+) True G116603
TU146113 lncRNA downstream 145890 12272589 ~ 12273496 (+) True G116653
TU146114 lncRNA downstream 151731 12278430 ~ 12278840 (+) True G116654
TU146128 lncRNA downstream 160870 12287569 ~ 12319488 (+) True G116667
AMCG00018478 mRNA upstream 9622 12073105 ~ 12116828 (+) True AMCG00018478
AMCG00018475 mRNA upstream 139396 11967889 ~ 11987054 (+) True AMCG00018475
AMCG00018476 mRNA upstream 160120 11956229 ~ 11966330 (+) True AMCG00018476
AMCG00018471 mRNA upstream 226203 11855520 ~ 11900247 (+) True AMCG00018471
AMCG00018469 mRNA upstream 309402 11755834 ~ 11817048 (+) True AMCG00018469
AMCG00018477 mRNA downstream 24690 12151389 ~ 12163807 (+) True AMCG00018477
AMCG00018481 mRNA downstream 59991 12186690 ~ 12187328 (+) True AMCG00018481
AMCG00018482 mRNA downstream 68843 12195542 ~ 12202096 (+) True AMCG00018482
AMCG00018483 mRNA downstream 108312 12235011 ~ 12270627 (+) True AMCG00018483
AMCG00018487 mRNA downstream 167278 12293977 ~ 12312814 (+) True AMCG00018487
TU146017 other upstream 155672 11966247 ~ 11970778 (+) True G116585
TU145312 other upstream 2513532 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 2562046 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 2884635 9239811 ~ 9241815 (+) True AMCG00018360
TU145182 other upstream 2924864 9199657 ~ 9201586 (+) False AMCG00018358
TU146176 other downstream 389104 12515803 ~ 12519881 (+) True AMCG00018491
TU146344 other downstream 1126644 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 1181199 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 1893229 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 1919560 14046259 ~ 14049153 (+) True G117033

Expression Profile