RNA id: TU146255


Basic Information

Item Value
RNA id TU146255
length 1867
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G116765
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 12905100 ~ 12958552 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttcacactgcaggTCACATGGATCAAACCATGTTTTGTTGTGAATTTGGATacctcttaaaaaaacaaagtggtttcctcctttttaaaaacacattgtttttattgtcatgACCTCAACGACAGCTGcatccaaacaaataaaatttgacaaaaaactaaaccaaaacaagaaacagtGGTGCTTGCAAACAGTAACTTTTACAGAACATGGGCAATGTCTGACTCAAATCAGAACTGAGAAGGAAAAACATCAGCAAAATTAACCCATGCTGTAAAATTGGTCCAAGAAGTATTTTAACAAGAGTGCATTATCAGTACAGGAAACACAAGACCTTGAACAGTTTAATAAACAGAGTCCATTAAGATATATTGAATTACAATCAATATCACTTTGTGTACATTACCCTATCTCACAGCTTACAGATACATTAGAGATGTGCTACCACACATAGTAAACACTAAGCATTGTTGATATTCCACGCACTTCCCCAGCCCCACCCCACTCAGGGATTATCTCAAAAGTTTCAATACTTTATACAAGAGGTTCAACCCATGGAAatggacagaaaataaatccctAGTACATGTCATTGGTAcagtttgtgagtgtgtttcaaaggttaatgaaacaaaataaaagtttcgTATGACTACAAGGTATAAGGTACAATTTGCAttcatgaattttaaaaaggcatgttCTCACGAATGCAAAGACCCAgtaagtgattttatttttgtcagatcGACTAAGAAAGATGTCTTCAGTCTGTGACTTGACGTGTCTCGAAAGCAGACTGAAATCTTCTGTAGTAAAGTATTCAAAAATGATCGTATTACATCTGATTTCCAGCAAGGCAGCCAAAGATTTAAAATCTCATCAAGGGCTGGTTGCATTCAAGTGGATTACACGAGCCTAAGGAGCTAGACTTATTCTAATATTGTCAGTTACACTTGCCTCAATCCAGTTAGCCTGAAATTATGACATCATCTACCTCAGGCTAATTTAATGAGTTCTGTCTCTGGTAAATGTTACTGATCAGAATTACTGATCTGCATCGTTGGTGTCTACCTCTCGTACAACCCATTACACGTCACCGAAAAATGacttattactattattattggcCAGGACAAGAAGGGGCCTTTAACACTGAGAACCAATATTCATCAatccttttgtttctttttctcctaGAGGATGCCATGCTGTGTGTGCATCAGTAGTTTTATAGAGCAGTAGTGCCTTGCGAGAGATTCAAGGTGTTCAGTGAGCTCTAGTGGAAAATCAGAGGCTGAACCTTGCCTCATTGGTCCAGGGTTAAAGATGAGGGTTGAACCCTTGGATGTTGAATGGAAAAAAACGAATCTCAACAATACGGAGAGGTGTTCACTGTTTGAATGCTCGGTAGCGACAGGAGCTTAATTTGAAAGTATTTCAGGGAATCGTATCGCACATTGGGAGCATAAGGCAAATATTACGTTGAATAATCTCGTCTCCTAATCATTCTGCTTTGACGTTCACCAGGCGATTGTGTGGAGCTGTAAATATTCCAAATGTCATGGATTAGTGAGACTATCCCATCCGCATAGCTGTCAATCACTTGTAACCCCCCCAGGACCGATGTTGAGATTGTGTTTCTGTCCACTTTTGAGAAGATCCCATGATAGTACCACTGTAAAGAAAACTAGAAGAATAACCCCCCACAAACTGTAGTATGTATAACAATGTAGGCATAGTGTGCTTACATTCACACTGGTACATAATTTCACTTTGTAACACTACTGATTTGGACAACCTACCAAGCTCCTACCTATACACAGAAAGggatcactttttttttttttttatttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146213 lncRNA upstream 21186 12879586 ~ 12883914 (+) True G116728
TU146210 lncRNA upstream 204335 12700501 ~ 12700765 (+) True G116725
TU146185 lncRNA upstream 316444 12543545 ~ 12588656 (+) False AMCG00018498
TU146168 lncRNA upstream 405052 12496794 ~ 12500048 (+) False AMCG00018493
TU146128 lncRNA upstream 585612 12287569 ~ 12319488 (+) True G116667
TU146267 lncRNA downstream 88565 13047117 ~ 13048094 (+) True G116775
TU146286 lncRNA downstream 171186 13129738 ~ 13215352 (+) True G116790
TU146409 lncRNA downstream 408088 13366640 ~ 13367028 (+) True G116882
TU146490 lncRNA downstream 707471 13666023 ~ 13691367 (+) True G116941
TU146532 lncRNA downstream 881164 13839716 ~ 13839971 (+) True G116975
AMCG00018503 mRNA upstream 599 12885187 ~ 12904501 (+) True AMCG00018503
AMCG00018502 mRNA upstream 26219 12836224 ~ 12878881 (+) True AMCG00018502
AMCG00018501 mRNA upstream 85957 12784691 ~ 12819143 (+) True AMCG00018501
AMCG00018500 mRNA upstream 167032 12714107 ~ 12738068 (+) True AMCG00018500
AMCG00018497 mRNA upstream 256220 12619360 ~ 12648880 (+) True AMCG00018497
AMCG00018508 mRNA downstream 160 12958712 ~ 13031788 (+) True AMCG00018508
AMCG00018506 mRNA downstream 74454 13033006 ~ 13043686 (+) True AMCG00018506
AMCG00018511 mRNA downstream 128909 13087461 ~ 13088726 (+) True AMCG00018511
AMCG00018510 mRNA downstream 142051 13100603 ~ 13123386 (+) True AMCG00018510
AMCG00018509 mRNA downstream 204105 13162657 ~ 13166145 (+) True AMCG00018509
TU146176 other upstream 385219 12515803 ~ 12519881 (+) True AMCG00018491
TU146017 other upstream 934322 11966247 ~ 11970778 (+) True G116585
TU145312 other upstream 3292182 9609077 ~ 9612918 (+) False AMCG00018380
TU145295 other upstream 3340696 9562161 ~ 9564404 (+) False AMCG00018372
TU145192 other upstream 3663285 9239811 ~ 9241815 (+) True AMCG00018360
TU146344 other downstream 294791 13253343 ~ 13255794 (+) True G116832
TU146394 other downstream 349346 13307898 ~ 13328272 (+) False AMCG00018520
TU146594 other downstream 1061376 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 1087707 14046259 ~ 14049153 (+) True G117033
TU146633 other downstream 1182825 14141377 ~ 14145578 (+) False AMCG00018538

Expression Profile