RNA id: TU146533


Basic Information

Item Value
RNA id TU146533
length 203
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G116976
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 13846890 ~ 13847092 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTACACCCAAGGGCAAAAGTCAAGGACAGCTGGTaataaaaggttttttttttttttgtttgtttcctggtATTGATACCCTTGAACTTAGGTTGAGAGGAAATGCTCAGTGGCAGTTTGAACTAATGGTTCTGCATTAACAATTgcaataaaaatagtttaaaaggaCTTGACAATCCAGTCACCTTAGTTTGAAAAGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146532 lncRNA upstream 6919 13839716 ~ 13839971 (+) True G116975
TU146490 lncRNA upstream 155523 13666023 ~ 13691367 (+) True G116941
TU146409 lncRNA upstream 479862 13366640 ~ 13367028 (+) True G116882
TU146286 lncRNA upstream 631538 13129738 ~ 13215352 (+) True G116790
TU146267 lncRNA upstream 798796 13047117 ~ 13048094 (+) True G116775
TU146591 lncRNA downstream 173551 14020643 ~ 14022806 (+) False AMCG00018537
TU146732 lncRNA downstream 395025 14242117 ~ 14242717 (+) False AMCG00018551
TU146733 lncRNA downstream 395772 14242864 ~ 14244203 (+) True G117130
TU146734 lncRNA downstream 397616 14244708 ~ 14245318 (+) True G117131
TU146778 lncRNA downstream 483749 14330841 ~ 14399539 (+) True AMCG00018564
AMCG00018527 mRNA upstream 61341 13782714 ~ 13785549 (+) True AMCG00018527
AMCG00018526 mRNA upstream 197798 13639723 ~ 13649092 (+) True AMCG00018526
AMCG00018523 mRNA upstream 312063 13468893 ~ 13534827 (+) True AMCG00018523
AMCG00018520 mRNA upstream 500013 13321350 ~ 13346877 (+) True AMCG00018520
AMCG00018515 mRNA upstream 594645 13246534 ~ 13252245 (+) True AMCG00018515
AMCG00018530 mRNA downstream 12803 13859895 ~ 13878065 (+) True AMCG00018530
AMCG00018534 mRNA downstream 38688 13885780 ~ 13902661 (+) True AMCG00018534
AMCG00018533 mRNA downstream 94536 13941628 ~ 13960988 (+) True AMCG00018533
AMCG00018536 mRNA downstream 125458 13972550 ~ 13985601 (+) True AMCG00018536
AMCG00018537 mRNA downstream 150817 13997909 ~ 14022066 (+) True AMCG00018537
TU146394 other upstream 518618 13307898 ~ 13328272 (+) False AMCG00018520
TU146344 other upstream 591096 13253343 ~ 13255794 (+) True G116832
TU146176 other upstream 1327009 12515803 ~ 12519881 (+) True AMCG00018491
TU146017 other upstream 1876112 11966247 ~ 11970778 (+) True G116585
TU145312 other upstream 4233972 9609077 ~ 9612918 (+) False AMCG00018380
TU146594 other downstream 172836 14019928 ~ 14022806 (+) False AMCG00018537
TU146602 other downstream 199167 14046259 ~ 14049153 (+) True G117033
TU146633 other downstream 294285 14141377 ~ 14145578 (+) False AMCG00018538
TU146688 other downstream 341911 14189003 ~ 14191077 (+) True AMCG00018553
TU146730 other downstream 392406 14239498 ~ 14242037 (+) False AMCG00018551

Expression Profile