RNA id: TU146734


Basic Information

Item Value
RNA id TU146734
length 611
lncRNA type inter_gene
GC content 0.69
exon number 1
gene id G117131
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14244708 ~ 14245318 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCGCAGGCGCACGTTGGTGGGCCCGTAGTGCTCTGAGATCAGCGCGCCGGGAGCCAGCAGCGAGAAGCAGGCGTTGCCGAAGACGTTGTTGCCCAGGAAGGTGCGCAGGGATCCCAGCAGCCGGTACGTGCGCGGGCAGCGCCGGCAGTTCTGTGGCACGCTCACTCCCTGGTTCACCAGGTAGAAGGTTAGCCACTGGCCCTGCGGCGTGCTGTTGGCCTTCCAGCCAGGGGGGGTGGTAGGGGAGGCGCCAGTGGGGGGGCGGTACACACTGTGGAACTCAGCCAGCAGGGCCGGGTAGTTCCTCTCCAGGAGCTCCACATCGTGCTTCTGCGCCTCGCGGGAGAAGTAGGGCGCGCTGGGCAGGTCGGGCAGGAAGAACACCTCGGGCCGCTGGATGGAGGCGGGCCGGGCGGACAGGTATCGGCCCTGCTCCCGCACGCCCTTGTGCACGCGGCCCATGCCCGCCCAGGTGTAGCGCTTGGCGTACTCCTGCAGGCTGTGGTACAGCCGCTGGTTCAGCCCCTCCCCCGGCGCTGAGCAGCGGAAGCACTCTGGTGACTGGCAGTAGGCGAATCCATTCTGCCCCCCTCCCAGCCCCACCCCCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU146733 lncRNA upstream 505 14242864 ~ 14244203 (+) True G117130
TU146732 lncRNA upstream 1991 14242117 ~ 14242717 (+) False AMCG00018551
TU146591 lncRNA upstream 221902 14020643 ~ 14022806 (+) False AMCG00018537
TU146533 lncRNA upstream 397616 13846890 ~ 13847092 (+) True G116976
TU146532 lncRNA upstream 404737 13839716 ~ 13839971 (+) True G116975
TU146778 lncRNA downstream 85523 14330841 ~ 14399539 (+) True AMCG00018564
TU146746 lncRNA downstream 163813 14409131 ~ 14412255 (+) False AMCG00018567
TU146814 lncRNA downstream 192674 14437992 ~ 14439091 (+) True G117197
TU146834 lncRNA downstream 288645 14533963 ~ 14534200 (+) True G117209
TU147042 lncRNA downstream 490778 14736096 ~ 14738327 (+) True G117353
AMCG00018551 mRNA upstream 2443 14239242 ~ 14242265 (+) True AMCG00018551
AMCG00018550 mRNA upstream 6759 14232722 ~ 14237949 (+) True AMCG00018550
AMCG00018552 mRNA upstream 12394 14230990 ~ 14232314 (+) True AMCG00018552
AMCG00018549 mRNA upstream 44364 14192138 ~ 14200344 (+) True AMCG00018549
AMCG00018553 mRNA upstream 53641 14189942 ~ 14191067 (+) False AMCG00018553
AMCG00018558 mRNA downstream 115718 14361036 ~ 14367961 (+) True AMCG00018558
AMCG00018568 mRNA downstream 143708 14389026 ~ 14389346 (+) True AMCG00018568
AMCG00018570 mRNA downstream 146991 14392309 ~ 14393844 (+) True AMCG00018570
AMCG00018564 mRNA downstream 149685 14395003 ~ 14399115 (+) False AMCG00018564
AMCG00018569 mRNA downstream 159088 14404406 ~ 14406978 (+) True AMCG00018569
TU146730 other upstream 2671 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 53631 14189003 ~ 14191077 (+) True AMCG00018553
TU146633 other upstream 99130 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 195555 14046259 ~ 14049153 (+) True G117033
TU146594 other upstream 221902 14019928 ~ 14022806 (+) False AMCG00018537
TU146792 other downstream 99772 14345090 ~ 14347741 (+) True G117178
TU147075 other downstream 530471 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 541305 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 709246 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2822894 17068212 ~ 17069670 (+) True G117786

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00071549 False 2792 mRNA 0.49 4 NC_007119.7 39965117 ~ 39978767 (-)