RNA id: TU147073


Basic Information

Item Value
RNA id TU147073
length 899
lncRNA type inter_gene
GC content 0.58
exon number 2
gene id G117379
representative False

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14774115 ~ 14777110 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTGCAGTTGGGCAGACCAGAGTGGCAGAACTGAGGGACGCTGGGGGTGTAAATTAGGAGACGCACACAGTGACTGGGGTATTTGGGTGACTTTATTGATTGCCGTTTCTCACAGGGGTCCCTAGTCGAACAGCCCGAAGCCCATGTCGTCGTCAGACTCCTCGGACTCCTCCTTCACCTCCTCCTTGGCAGCGGGGGTGGCAGCTGCAGTTTCAGCTGCAGCCACTGGGGCGGCGACAGCAAAGGCTGTGGGGTCAGCCAGGAAAGCTTTGACCTGGGGGGGACAGAGAGGTCAGTACACTGCATAGCACCAAGGTGCCAATTTGCTGGAGAGACAGTACAGTAGGGTCTGCAGCCCTGGACCCGAGAGCTACAGTACATTTATAGAGTTCAGTCTGAGCCTCAGTGTTCGGGGCTGTGGAGACTGTTCAGGGGTACGCTGGGGCGTCTCACCTTATCAGCCAGGGGGAAGGAGTAGTCTGTCTCCATCGCGATGGCCAGGACTCTCTTGTAGCCGTTGATGATGGAGTGGGGGAGGGAGGCCACAGTGGGGTACCCGATCTCCAGGCACACACTGGCCACGTTCCTCACGCCCTCAGGAAGCGCTGGTGCAGGGTGTCCTCAGTGATGTCCAGAACCTCAGGGCTGTAGACGCTGCCGTTGTCATACACCTGCTGGATGATCAGGCCGAAGGAGAAGGGCGAGATGTTCAGCATATTGAGCAGCGTGGCCTCGCTGGCGCCCACCTTGTCTCCAGTCTTGATCAGCTGCACGTCGCTCTGAGGGACGAGAGAGGGGGGTTAAAGGTGGCTACAGAAGCTAGAGAGAGTGGGGTTACCAGGCATCCAGAGACATTTGACACTGAGACTATTCCTCTGGAAGAGTGTGCGAGACCAGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147042 lncRNA upstream 35788 14736096 ~ 14738327 (+) True G117353
TU146834 lncRNA upstream 239915 14533963 ~ 14534200 (+) True G117209
TU146814 lncRNA upstream 335024 14437992 ~ 14439091 (+) True G117197
TU146746 lncRNA upstream 361860 14409131 ~ 14412255 (+) False AMCG00018567
TU146778 lncRNA upstream 374576 14330841 ~ 14399539 (+) True AMCG00018564
TU147082 lncRNA downstream 8266 14783506 ~ 14784333 (+) True G117381
TU147083 lncRNA downstream 10785 14786025 ~ 14786487 (+) True G117382
TU147088 lncRNA downstream 17556 14792796 ~ 14793804 (+) True G117387
TU147089 lncRNA downstream 18645 14793885 ~ 14794239 (+) True G117388
TU147090 lncRNA downstream 21291 14796531 ~ 14797150 (+) True G117389
AMCG00018588 mRNA upstream 42451 14707571 ~ 14731664 (+) True AMCG00018588
AMCG00018586 mRNA upstream 127283 14630062 ~ 14646832 (+) True AMCG00018586
AMCG00018585 mRNA upstream 159670 14599262 ~ 14614445 (+) True AMCG00018585
AMCG00018577 mRNA upstream 186087 14574260 ~ 14588028 (+) True AMCG00018577
AMCG00018581 mRNA upstream 216315 14554089 ~ 14557800 (+) True AMCG00018581
AMCG00018593 mRNA downstream 46751 14821991 ~ 14824758 (+) True AMCG00018593
AMCG00018600 mRNA downstream 56260 14831500 ~ 14834064 (+) True AMCG00018600
AMCG00018608 mRNA downstream 151922 14927162 ~ 14927524 (+) True AMCG00018608
AMCG00018603 mRNA downstream 174396 14949636 ~ 14954263 (+) True AMCG00018603
AMCG00018602 mRNA downstream 179434 14954674 ~ 14981705 (+) True AMCG00018602
TU146792 other upstream 426374 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 532078 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 583038 14189003 ~ 14191077 (+) True AMCG00018553
TU146633 other upstream 628537 14141377 ~ 14145578 (+) False AMCG00018538
TU146602 other upstream 724962 14046259 ~ 14049153 (+) True G117033
TU147075 other downstream 549 14775789 ~ 14776494 (+) False G117379
TU147084 other downstream 11383 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 179324 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2292972 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 3205970 17981210 ~ 17982114 (+) False AMCG00018681

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU60034 True 2816 lncRNA 0.48 4 NC_056703.1 31014943 ~ 31112079 (+)
mexican tetra (Astyanax mexicanus) TU60034 True 249 lncRNA 0.44 1 NC_035901.1 22962497 ~ 22962745 (+)