RNA id: TU147082


Basic Information

Item Value
RNA id TU147082
length 828
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G117381
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 14783506 ~ 14784333 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gctgCAACTGTATGGGGTTTGAGAACTCTCTCtctgggggaggaggggggggtagCACAGAATGAGATATTTAGATATGTTGGATTAAAAATGTCTTGACAAGCACAGCCTCTGGCTTGTGGTCAGAACTTTTCCAAAAACACTGGTCAGCCACTCCTACAGatctttatatttgtatatatatttggatcCAAACCTCTATCTGTATAtttatctatcaatctatctatatatgtatttgtagatGTGATTttaggttttgtatttttaatttaagaaaaaaaaaaatctatagaaaaagtttacaaaaatattgtCCCGATATATACTTTACCAAGCTGTAAAAATGCACCTTTGATTTTCGTGTGAGAGACAaacagagatagagacagagagagagagacagacaccaCTTGGCTGACAGAAATTTGAGCTCTGGTCtgtgttgtaaaaataaatctcactaTAAAAAAATAGAGACACCAAGTGtctgagtgtgtatgtattcGTGCGTCTCTCTCTTGTGCTGGTGTGAGtcggtgtgtgtatgtgggtgtgCATCTCTCTGaatatgtgtgggtgtgtgtcggTGAGTGCATGTCTCCGAGTGTGTGGCATTGAATGTAGACTGCATGCAGAGACGGACAGCTCCTCCCTTCACCTTAGACAGACGGAGACAGACAGGCTGCAGAGGCGGGATCAGTATCaggctggggagggggggtaggAGGTGTCGTTGGTTGTGTGCTGGAGTTGTGTGGATTGGCGTTTGTAGTGAATGGCCTGGTCTTCTAGTGgctctcctcccctcctcctttcTCATCCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147077 lncRNA upstream 6396 14774115 ~ 14777110 (+) True G117379
TU147070 lncRNA upstream 8266 14774115 ~ 14775240 (+) False G117379
TU147072 lncRNA upstream 8266 14774115 ~ 14775240 (+) False G117379
TU147073 lncRNA upstream 8266 14774115 ~ 14775240 (+) False G117379
TU147042 lncRNA upstream 45179 14736096 ~ 14738327 (+) True G117353
TU147083 lncRNA downstream 1692 14786025 ~ 14786487 (+) True G117382
TU147088 lncRNA downstream 8463 14792796 ~ 14793804 (+) True G117387
TU147089 lncRNA downstream 9552 14793885 ~ 14794239 (+) True G117388
TU147090 lncRNA downstream 12198 14796531 ~ 14797150 (+) True G117389
TU147080 lncRNA downstream 70746 14855079 ~ 14899918 (+) True G117380
AMCG00018588 mRNA upstream 51842 14707571 ~ 14731664 (+) True AMCG00018588
AMCG00018586 mRNA upstream 136674 14630062 ~ 14646832 (+) True AMCG00018586
AMCG00018585 mRNA upstream 169061 14599262 ~ 14614445 (+) True AMCG00018585
AMCG00018577 mRNA upstream 195478 14574260 ~ 14588028 (+) True AMCG00018577
AMCG00018581 mRNA upstream 225706 14554089 ~ 14557800 (+) True AMCG00018581
AMCG00018593 mRNA downstream 37658 14821991 ~ 14824758 (+) True AMCG00018593
AMCG00018600 mRNA downstream 47167 14831500 ~ 14834064 (+) True AMCG00018600
AMCG00018608 mRNA downstream 142829 14927162 ~ 14927524 (+) True AMCG00018608
AMCG00018603 mRNA downstream 165303 14949636 ~ 14954263 (+) True AMCG00018603
AMCG00018602 mRNA downstream 170341 14954674 ~ 14981705 (+) True AMCG00018602
TU147075 other upstream 7012 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 435765 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 541469 14239498 ~ 14242037 (+) False AMCG00018551
TU146688 other upstream 592429 14189003 ~ 14191077 (+) True AMCG00018553
TU146633 other upstream 637928 14141377 ~ 14145578 (+) False AMCG00018538
TU147084 other downstream 2290 14786623 ~ 14788133 (+) True G117383
TU147178 other downstream 170231 14954564 ~ 14956580 (+) False AMCG00018602
TU147595 other downstream 2283879 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 3196877 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 3196877 17981210 ~ 17982303 (+) False AMCG00018681

Expression Profile