RNA id: TU147318


Basic Information

Item Value
RNA id TU147318
length 2041
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G117574
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 15693213 ~ 15695253 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGCTTTTGGGTCCTGTGTATTCAGGGTTACCTCctcaaaatgtactgtatttaccTTTCCTGATGAAGATAGGTGAAAGTAGACTAGTGGTGAGTGGAAGTTTATTCCAAAGAGCTAATAAATGCCAAGGAGAATGGGACGGACTAACAGATAAACTTACTAGAGAAGTTCATAACCAAAGTTAAATTGTGAGTAAATGTTTGATATAGCAGACTAAATTATTTAGCgtttttttgttagttattttcctgtacaaaacaaaatctacagTGAGACCTTTCTCGTGTCTATCTAACCACTGTATTTATGACCAATGAaagtctttgtttgttttgcaaagtaAAACTTCTGCTGACTGGTGGGCTGGTAAAACTGTAAACTTTCGGTTTTGCTAAAAGTTTACAATGTTCCCGCAatccattgtttttttctttcttttttttcttttttgttacaGGGGTCCTTCTCAGAATTGTACTTGCCTGTGTCTTAACAGGGTTTGAGTTGTATATTCTTTTCAGTTCAGAccaaaaacagacaacaaacaaacaaggaaacaaattgTAATCAGATTTAAAGATGTGAAGTTTTAAGTTTGCCTGTTAGCTTAGGTTAGATGTGTGAAGCTCGAACTGAAAATAATAGGAGTGGAttggatgtttttcttttttttttttggttagaaACGACCTTTTTcttgtttccaaattttcaaCTGGATTTGTACCCACCACAGTGATACTGGTATAGAATGTTATCAACCCTTTACTGGAGTCTTTACAGTTGTTCCTCATTCTCAGAGTTGATATGATAGTAATGATACTATTAACAATGACAAAGTCTGAGCCCTCTTGTAGGCCAATTGCATGATGTTACTGAGTAAGGGTGAATGTTACTAAAGAaaacataacaacaaaaatgaaaactacaagaaaacaaatccgTTACCCCTTGCCAATATGAGCAAGTCCCTGAGAGAAACCGATGCCCTTTGGATTGTAGGAAAGAGAGATTGTCCAGCTTCTTATTCCTGTACGATGTTGTATGTAGAGGGACCTTCACTGCGCAAGTCTTGGATAGGCATTCCTTTactcattgatttttttatattttgttctccCTTCTCCAAAGTCCTCTTATTATTTTACCAGTGCATTTTATGTCATTGTTGGGATGCAGCTATGGTCAAAATTTGAACGAATGAGTGCAGTTTAAGGCTCTGTGTCCTGGATTCCTGCcgtcttctctttttttattgtgggAAAATTccaagctttttttattttatttctgccttTAGTAAAATTAGTTGTGTTCAGAGATCATACTAAGAAACTCCTTGTTCTCTAtgtcctatatatattttttaatagttttaagtcACATGTAGTCTTTCAGAGAACAAGGTTAATTGAAAACTCTTGTGGCACAGCACCTTGCAGTCTTAAGGGCCTATACAGCTCTATTTGCTGCACAAAGTGCCACGTTTTCTTCCCCCAGCCATTTTAAAACTATAGTCTTAACCTTCACCATTAATGCTGAAGCTAGTATGAAATGGAGGAcatcacttaattttttttttcctgattttcTGATGAAACGAtgcatgctgtttttttgtttttgttttttctttccattcagGAATCCTTGATGCATTGCTTGTAAACCAATGTGTACTTATCAGCACTTAATCAGTACAGCATAATGTCTGTGTTAAGCAAGGATATATTGTACAGCAGGATCTCTCTTTCTCAGTAAATAAGTAGGTGCGTGCAGTAGAATAATCTTCTAAaagaaaacgaaaaaaaaaaacgaaaaaaaaaaaaaactccaaactGTGACAGTAATACTACTACTCAAAACTTCAGGGATAGTTCTGTACGGTTGAGTATAGGACTTTCAGCTACATTTGTAAGACATAGTATTGTatcaatttctgtattttaatgatgaaaagcaaaacactaGTTTCCTATTTAAGATTTTAAGAGGGGGGTACTTTTTTCAATTAACACAAAGCCTCGACAAGAGGTTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147297 lncRNA upstream 65494 15627339 ~ 15627719 (+) True G117557
TU147253 lncRNA upstream 163872 15525714 ~ 15529341 (+) False G117521
TU147252 lncRNA upstream 163901 15492246 ~ 15529312 (+) True G117521
TU147080 lncRNA upstream 793295 14855079 ~ 14899918 (+) True G117380
TU147090 lncRNA upstream 896063 14796531 ~ 14797150 (+) True G117389
TU147317 lncRNA downstream 173 15695426 ~ 15698865 (+) True G117573
TU147415 lncRNA downstream 388100 16083353 ~ 16121445 (+) True G117660
TU147567 lncRNA downstream 1053616 16748869 ~ 16749971 (+) True G117768
TU147592 lncRNA downstream 1313645 17008898 ~ 17009246 (+) True G117783
TU147612 lncRNA downstream 1458529 17153782 ~ 17155824 (+) True G117801
AMCG00018624 mRNA upstream 1472 15682455 ~ 15691741 (+) True AMCG00018624
AMCG00018620 mRNA upstream 23544 15668815 ~ 15669669 (+) True AMCG00018620
AMCG00018618 mRNA upstream 45038 15637974 ~ 15648175 (+) True AMCG00018618
AMCG00018619 mRNA upstream 108126 15583593 ~ 15585087 (+) True AMCG00018619
AMCG00018611 mRNA upstream 224831 15430284 ~ 15468382 (+) True AMCG00018611
AMCG00018623 mRNA downstream 77056 15772309 ~ 15777303 (+) True AMCG00018623
AMCG00018625 mRNA downstream 90640 15785893 ~ 15790897 (+) True AMCG00018625
AMCG00018630 mRNA downstream 317034 16012287 ~ 16025098 (+) True AMCG00018630
AMCG00018635 mRNA downstream 560944 16256197 ~ 16278801 (+) True AMCG00018635
AMCG00018637 mRNA downstream 585580 16280833 ~ 16286663 (+) True AMCG00018637
TU147178 other upstream 736633 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 905080 14786623 ~ 14788133 (+) True G117383
TU147075 other upstream 916719 14775789 ~ 14776494 (+) False G117379
TU146792 other upstream 1345472 14345090 ~ 14347741 (+) True G117178
TU146730 other upstream 1451176 14239498 ~ 14242037 (+) False AMCG00018551
TU147595 other downstream 1372959 17068212 ~ 17069670 (+) True G117786
TU147848 other downstream 2285957 17981210 ~ 17982114 (+) False AMCG00018681
TU147849 other downstream 2285957 17981210 ~ 17982303 (+) False AMCG00018681
TU147936 other downstream 3023953 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 3753373 19448626 ~ 19450628 (+) False AMCG00018740

Expression Profile