RNA id: TU147877


Basic Information

Item Value
RNA id TU147877
length 297
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G118005
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18217803 ~ 18218099 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctggccactctaccatacaggcctgattggtggagtgctgcagagatggttgttcttctggaaggttctcctctctccacagagacacgcttgAGCtttgtcagagtgaccatcgggttcttggtcacctccctgactaaggcccttctcccccgatcgctcagtttggccgggcggccagctctaggaagagtcctggtggttccaaacttcttccatttacagatgatggaggccactgtgctcattgggaccttcaatgctgcagaaatgtttctgtacccttccccagatctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147850 lncRNA upstream 234786 17981210 ~ 17983017 (+) True AMCG00018681
TU147816 lncRNA upstream 236864 17979011 ~ 17980939 (+) True G117959
TU147720 lncRNA upstream 632691 17584751 ~ 17585112 (+) True G117887
TU147627 lncRNA upstream 964780 17250869 ~ 17253023 (+) True G117813
TU147622 lncRNA upstream 993194 17224012 ~ 17224609 (+) True G117808
TU147886 lncRNA downstream 248269 18466368 ~ 18730812 (+) True G118013
TU147918 lncRNA downstream 456175 18674274 ~ 18676226 (+) True G118043
TU148025 lncRNA downstream 609498 18827597 ~ 18832243 (+) True AMCG00018712
TU148059 lncRNA downstream 688307 18906406 ~ 18908956 (+) False AMCG00018717
TU148164 lncRNA downstream 1005275 19223374 ~ 19227433 (+) True AMCG00018732
AMCG00018686 mRNA upstream 78262 18138045 ~ 18139541 (+) True AMCG00018686
AMCG00018685 mRNA upstream 182175 18023027 ~ 18035628 (+) True AMCG00018685
AMCG00018681 mRNA upstream 235744 17981140 ~ 17982059 (+) False AMCG00018681
AMCG00018678 mRNA upstream 258278 17933745 ~ 17959525 (+) True AMCG00018678
AMCG00018679 mRNA upstream 350818 17840752 ~ 17866985 (+) True AMCG00018679
AMCG00018698 mRNA downstream 127858 18345957 ~ 18437784 (+) True AMCG00018698
AMCG00018697 mRNA downstream 309644 18527743 ~ 18528121 (+) True AMCG00018697
AMCG00018693 mRNA downstream 344434 18562533 ~ 18571339 (+) True AMCG00018693
AMCG00018691 mRNA downstream 372867 18590966 ~ 18605862 (+) True AMCG00018691
AMCG00018692 mRNA downstream 428420 18646519 ~ 18659398 (+) True AMCG00018692
TU147849 other upstream 235500 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 235689 17981210 ~ 17982114 (+) False AMCG00018681
TU147595 other upstream 1148133 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 3261223 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 3429670 14786623 ~ 14788133 (+) True G117383
TU147936 other downstream 501107 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 1230527 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 1753040 19971139 ~ 19974730 (+) True AMCG00018762
TU148559 other downstream 2041278 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 2155897 20373996 ~ 20374812 (+) False AMCG00018781

Expression Profile