RNA id: TU147918


Basic Information

Item Value
RNA id TU147918
length 1505
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id G118043
representative True

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 18674274 ~ 18676226 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCTGAGCATCAACAGTTTTAATTACACTGATAGTTACAAAGacttcttaaaatgtataataaaatacatgttttagatTACAAGTTTTCATCCCTCTGAAAATGCATCCAAAAAGCAAAAAGAGAGGATTTGAGAGCCCCAGAAAACAGAACACTCTCACTGTGGAATCGAACACAGATAGGAATTTGTTTAAATGCTTAACAAGGTGTCCCCAGGACAAGCCagcactgatttatttttcctccagcATTTCAGTTCATGTTTGTGAGAGGTATGCAGTCGGTTCCTCACCCTCTACTACACCAGTATAACTTATCTGGCCATTTATAATTGTGTAAATACCGGGTTATATAAACTGATCTGGAGTAACAATGATCTGGATGTTATAGAAACCCCACACTCCTCTACAGATCCAAAAGACAGGACTGTGCGTTCGGGATCACCTCTAAGTCAGGGCAAAACAACACGGCTGCTCCGTCTGCCTTCTCCAGAAGACCCCACTGTCAGCATACAGTTACTGCTTCTtggctttcttcttcttctcggCCTTGGTGGTGTCATCGTGGACCTTCCTCTTGGCTGCTAGTTTGTTTGCCTCTCGGACTTTCCTCTTCTTGCCGAACATGATCTTGTCGTAGAGGtacttctctttcttcttcatcatcatgATGGCCAGGCGCTTCTCCTCGGCCTTCTCGTTCTGCTCCGTGTGCATCTTGTTCTCCATCTTCACCTTGCCTGGGGTCACCTTCACCGCGAGGGCCTTGCCCTGAGATCTCTGCTTCTCCATCTGTTTCAGGTTCTTCTCTTCGGATATCTCCTCGTCATCCAGCTCTTCATCCTCCGagccctcctcctcttcctcagagtcttcctcctcctcctcctcctcctcttcctcactctCTGCCCTCTCTGTCCTCTCTCCCCGCTGGAGGGCTAGCATATTCAGCTTCTCAGGAGGCACATAGTCGCCATCTTTCTCTTGCACGAAGGGtgagaggtgggggggcagggtgaCGCCAGCGAAAAAGTCCTCCACGGGCAGACGCAGCCTGGCATTGACACAGTCGAACACCCACTGGGGCTGCACATAGTACCTGCCACAACAATCAAGACCAGTCAGCAACAACGCCATTTTTCAGATTGTCCTACAATTATTTTTAGTCTTCCTACCAATACTTTATTAAAACTCTATATACCAAGcaatgtgatgtgtttttaatcaggttacattttaatttaaatttaatataaaacacgTCCCCCTGAAAATGAACaatttcctttttatgtttttattcccaAATCTCTCTTCTGCAGTCCCTTGGGGGTTCAGAGCAGGAACAATGACAAAGCGTGACTATCCAGCTCCCTCCCCCAGGACGCTGCAGGAGAAAGGGCTGCATTGAGCCCGGCAGCGCGGGTCTGAAAGGACTCTTTGTGGGCCGCTGCGATCCCAGTGCGGAGAGGGCTGCGCacggggggaaaaaacaaagcttCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU147877 lncRNA upstream 456175 18217803 ~ 18218099 (+) True G118005
TU147850 lncRNA upstream 691257 17981210 ~ 17983017 (+) True AMCG00018681
TU147816 lncRNA upstream 693335 17979011 ~ 17980939 (+) True G117959
TU147720 lncRNA upstream 1089162 17584751 ~ 17585112 (+) True G117887
TU147627 lncRNA upstream 1421251 17250869 ~ 17253023 (+) True G117813
TU148025 lncRNA downstream 151371 18827597 ~ 18832243 (+) True AMCG00018712
TU148059 lncRNA downstream 230180 18906406 ~ 18908956 (+) False AMCG00018717
TU148164 lncRNA downstream 547148 19223374 ~ 19227433 (+) True AMCG00018732
TU148221 lncRNA downstream 779916 19456142 ~ 19456983 (+) True G118285
TU148226 lncRNA downstream 791597 19467823 ~ 19473460 (+) True G118290
AMCG00018692 mRNA upstream 14876 18646519 ~ 18659398 (+) True AMCG00018692
AMCG00018691 mRNA upstream 68412 18590966 ~ 18605862 (+) True AMCG00018691
AMCG00018693 mRNA upstream 102935 18562533 ~ 18571339 (+) True AMCG00018693
AMCG00018697 mRNA upstream 146153 18527743 ~ 18528121 (+) True AMCG00018697
AMCG00018698 mRNA upstream 236490 18345957 ~ 18437784 (+) True AMCG00018698
AMCG00018701 mRNA downstream 8913 18685139 ~ 18690239 (+) True AMCG00018701
AMCG00018702 mRNA downstream 43242 18719468 ~ 18721139 (+) False AMCG00018702
AMCG00018708 mRNA downstream 52810 18729036 ~ 18729506 (+) True AMCG00018708
AMCG00018700 mRNA downstream 56881 18733107 ~ 18734584 (+) True AMCG00018700
AMCG00018711 mRNA downstream 133150 18809376 ~ 18821287 (+) True AMCG00018711
TU147849 other upstream 691971 17981210 ~ 17982303 (+) False AMCG00018681
TU147848 other upstream 692160 17981210 ~ 17982114 (+) False AMCG00018681
TU147595 other upstream 1604604 17068212 ~ 17069670 (+) True G117786
TU147178 other upstream 3717694 14954564 ~ 14956580 (+) False AMCG00018602
TU147084 other upstream 3886141 14786623 ~ 14788133 (+) True G117383
TU147936 other downstream 42980 18719206 ~ 18721343 (+) True AMCG00018702
TU148213 other downstream 772400 19448626 ~ 19450628 (+) False AMCG00018740
TU148369 other downstream 1294913 19971139 ~ 19974730 (+) True AMCG00018762
TU148559 other downstream 1583151 20259377 ~ 20260940 (+) True G118557
TU148611 other downstream 1697770 20373996 ~ 20374812 (+) False AMCG00018781

Expression Profile